View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_9 (Length: 431)
Name: NF18122_low_9
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 71 - 416
Target Start/End: Original strand, 37195127 - 37195475
Alignment:
| Q |
71 |
gctccaatccttcaaatctctctcgaagactcttccttccttctgtttcgggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatga |
170 |
Q |
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| T |
37195127 |
gctccaatccttcaaatctctctcgaagactcttccttccttctgtttccggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatga |
37195226 |
T |
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| Q |
171 |
agcccttctcgcaattcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaac---taactagtac |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37195227 |
agcccttctcgcaattcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaactagtaactagtac |
37195326 |
T |
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| Q |
268 |
tcattgtttagggtgaagttttggggtctgttgtggagtttgacaaagcaattcaattagatcctcgtcaaaaagcgtgtaggtttattcgtttttccga |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
37195327 |
tcattgtttagggtgaagttttggggtctgttgtggagtttgacaaagcaattcaattggatcctcgtcaaaaggcgtgtaggtttattcgtttttccga |
37195426 |
T |
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| Q |
368 |
actttcgtaaatatcaattgaatttggaattggaatgtattgatatttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195427 |
actttcgtaaatatcaattgaatttggaattggaatgtattgatatttt |
37195475 |
T |
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