View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18123_high_2 (Length: 241)
Name: NF18123_high_2
Description: NF18123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18123_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 8349969 - 8350082
Alignment:
| Q |
114 |
gttgattacactcttcttgat-aagtagcagatgtaaattaatactacatgactacaagcgcgagggataatagttaacagggaaataagaaactacaat |
212 |
Q |
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| T |
8349969 |
gttgattacactcttgataattaagtagcagatgtaaattaacattgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataat |
8350068 |
T |
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| Q |
213 |
cggagctccctttg |
226 |
Q |
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| T |
8350069 |
tggagctccctttg |
8350082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 8260574 - 8260650
Alignment:
| Q |
150 |
attaatactacatgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttg |
226 |
Q |
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| T |
8260574 |
attaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctctctttg |
8260650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 8349624 - 8349669
Alignment:
| Q |
5 |
tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa |
50 |
Q |
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| T |
8349624 |
tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa |
8349669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 8352758 - 8352803
Alignment:
| Q |
176 |
agggataatagttaacagggaaataagaaactacaatcggagctcc |
221 |
Q |
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| T |
8352758 |
agggataatagttaacagggaaataagaaactacaattgaagctcc |
8352803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 8252867 - 8252928
Alignment:
| Q |
165 |
ctacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttg |
226 |
Q |
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| T |
8252867 |
ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctccctttg |
8252928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 8334018 - 8334083
Alignment:
| Q |
162 |
tgactacaagcgcgaggg-ataatagttaacagggaaataagaaactacaatcggagctccctttg |
226 |
Q |
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| T |
8334018 |
tgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattggaactccttttg |
8334083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 8265551 - 8265616
Alignment:
| Q |
161 |
atgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttg |
226 |
Q |
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| T |
8265551 |
atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctccctttg |
8265616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 44799719 - 44799682
Alignment:
| Q |
3 |
cctttaagctgaaccagattcttgtgccgcaagcaacc |
40 |
Q |
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| T |
44799719 |
cctttaagctgaaccagattcttgtgccgcaagcaacc |
44799682 |
T |
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