View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_high_1 (Length: 635)

Name: NF18124_high_1
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_high_1
NF18124_high_1
[»] chr1 (1 HSPs)
chr1 (15-617)||(46359041-46359642)
[»] chr8 (6 HSPs)
chr8 (51-617)||(44460171-44460736)
chr8 (51-617)||(44467704-44468269)
chr8 (112-572)||(34502006-34502460)
chr8 (15-54)||(34501841-34501880)
chr8 (15-54)||(44460804-44460843)
chr8 (15-54)||(44468337-44468376)
[»] chr5 (5 HSPs)
chr5 (222-617)||(38604846-38605243)
chr5 (222-494)||(40180344-40180615)
chr5 (543-615)||(40180712-40180784)
chr5 (444-494)||(41885933-41885983)
chr5 (427-515)||(40181263-40181351)
[»] chr6 (3 HSPs)
chr6 (329-399)||(411026-411096)
chr6 (445-497)||(410925-410977)
chr6 (444-497)||(9161370-9161423)


Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 15 - 617
Target Start/End: Complemental strand, 46359642 - 46359041
Alignment:
15 cataggcagtaataattatactgatatcgtatattgaaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
46359642 cataggcagtaataattatactgatatcgtatattgaaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcct 46359543  T
115 cagggatatcattcaacatcttgaaagccaaatgtacagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcag 214  Q
    | |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
46359542 cggggatatcattcaacatcttgaaagccaaatgtacagtttctttttttaaacatagcattttgatcatattaagtggtaacaacattcttaacttcag 46359443  T
215 cggccaatttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtca 314  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||     
46359442 cggccaatttgggtttgtttagcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtcc 46359343  T
315 ccaagtatctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46359342 ccaagtatctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttg 46359243  T
415 tggtcnnnnnnngcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttcctt 514  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46359242 tggtc-aaaaaagcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttcctt 46359144  T
515 ggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacag 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
46359143 ggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacag 46359044  T
615 aaa 617  Q
    |||    
46359043 aaa 46359041  T

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Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 51 - 617
Target Start/End: Complemental strand, 44460736 - 44460171
Alignment:
51 aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcctcagggatatcattcaacatcttgaaagccaaatgta 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
44460736 aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcctcggggatatcattcaacatcttgaaagccaaatgta 44460637  T
151 cagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcagcggccaatttgggtttgttttgcgtctctcatttgc 250  Q
    |||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
44460636 cagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaacttcagcggccagtttgggtttgttttgcgtctctcatttgc 44460537  T
251 agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagtatctcgccgtcatcaggaaggatggtttct 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||    
44460536 agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaaggatggtttct 44460437  T
351 ggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcnnnnnnngcttgcagcgtatggatatatgta 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
44460436 ggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc-aaaaaagcttgcagcgtatggatatatgta 44460338  T
451 tcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44460337 tcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgat 44460238  T
551 tgagaatcctggtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaa 617  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
44460237 tgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaa 44460171  T

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Target: chr8; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 51 - 617
Target Start/End: Complemental strand, 44468269 - 44467704
Alignment:
51 aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcctcagggatatcattcaacatcttgaaagccaaatgta 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
44468269 aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcctcggggatatcattcaacatcttgaaagccaaatgta 44468170  T
151 cagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcagcggccaatttgggtttgttttgcgtctctcatttgc 250  Q
    |||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
44468169 cagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaacttcagcggccagtttgggtttgttttgcgtctctcatttgc 44468070  T
251 agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagtatctcgccgtcatcaggaaggatggtttct 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||    
44468069 agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaaggatggtttct 44467970  T
351 ggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcnnnnnnngcttgcagcgtatggatatatgta 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
44467969 ggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc-aaaaaagcttgcagcgtatggatatatgta 44467871  T
451 tcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44467870 tcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgat 44467771  T
551 tgagaatcctggtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaa 617  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
44467770 tgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaa 44467704  T

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Target: chr8; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 112 - 572
Target Start/End: Original strand, 34502006 - 34502460
Alignment:
112 cctcagggatatcattcaacatcttgaaagccaaatgtacagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaactt 211  Q
    ||||||||||||||||||||||||  ||||||| |||||| |||||       ||||| || ||||||||| |||| | |||||| |||||| |||||||    
34502006 cctcagggatatcattcaacatctccaaagccagatgtaccgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaactt 34502105  T
212 cagcggccaatttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatg 311  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||      || ||  ||| | |    
34502106 cagcgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagagcataggcttctttaatcatattttttt-----gagaaacttaacaag 34502200  T
312 tcaccaagtatctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacact 411  Q
    |  |||| ||| || |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||      
34502201 tggccaattatgtcaccgttatcaggaaggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatc 34502300  T
412 ttgtggtcnnnnnnngcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttc 511  Q
    ||||| ||       |||| ||| |||  | | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |  ||||||    
34502301 ttgtgatc-aaaagagctttcagtgtaaaggtgtatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaacttcgggtgcaatctttc 34502399  T
512 cttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaag 572  Q
    |||||  |||||| ||| ||| ||| ||||||||||||| ||||||||  ||| |||||||    
34502400 cttggtccaacataaatgcaagggaatgtaggagttgatagagaatccgtgtgttaagaag 34502460  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 34501841 - 34501880
Alignment:
15 cataggcagtaataattatactgatatcgtatattgaagg 54  Q
    |||||||||||||||||||||||||||| |||||||||||    
34501841 cataggcagtaataattatactgatatcatatattgaagg 34501880  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44460843 - 44460804
Alignment:
15 cataggcagtaataattatactgatatcgtatattgaagg 54  Q
    |||||||||||||||||||||||||||| |||||||||||    
44460843 cataggcagtaataattatactgatatcatatattgaagg 44460804  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44468376 - 44468337
Alignment:
15 cataggcagtaataattatactgatatcgtatattgaagg 54  Q
    |||||||||||||||||||||||||||| |||||||||||    
44468376 cataggcagtaataattatactgatatcatatattgaagg 44468337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 222 - 617
Target Start/End: Original strand, 38604846 - 38605243
Alignment:
222 tttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagta 321  Q
    ||||| |||||||| ||| |||| |||||||||||| ||| |||||| |||||||||||||||||  ||||| || | |||  ||| | | |||||| ||    
38604846 tttggatttgttttccgtttctcctttgcagccagatagatagcatatgcttctttaatcatattatttttagaagaccaaactaacaagacaccaatta 38604945  T
322 tctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc-- 419  Q
    | || || ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||      
38604946 tttcaccatcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtctt 38605045  T
420 nnnnnnngcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcac 519  Q
           |||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  |    
38605046 aaaaagagcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcc 38605145  T
520 aacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaa 617  Q
     |||   ||||||| || | |||||||||||||||||||  |||| |||||||| ||||||   | ||||||||||| |||||||| |||||||||||    
38605146 cacacatatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcggaatggccaatatgtttaagcaagtcccacagaaa 38605243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 222 - 494
Target Start/End: Original strand, 40180344 - 40180615
Alignment:
222 tttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagta 321  Q
    ||||||||| |||| ||| |||||||||| ||| || ||||||||||||||||||||||||||||  ||||| |||| |||  ||| | |  ||||||||    
40180344 tttgggtttcttttccgtttctcatttgctgcccgatagagagcataggcttctttaatcatattatttttagaaaaccaagttaacaagcgaccaagta 40180443  T
322 tctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcnn 421  Q
    |||  || |||||||||||||  || ||||| ||||||| |||||||||||| || ||||||||||| ||||  | ||||||  |  | | | ||  |      
40180444 tcttaccatcatcaggaaggagagtatctggttgaagcaccatcttttgacatatggaagcggcttgctggagtacatcagtactgtaatctatgc-cac 40180542  T
422 nnnnngcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaac 494  Q
         |||||||| |||  |||||||||||||||||| ||||| ||||||||  |||||||||||||||||||    
40180543 aaatagcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaac 40180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 615
Target Start/End: Original strand, 40180712 - 40180784
Alignment:
543 gagttgattgagaatcctggtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacaga 615  Q
    |||||||||||||||||  ||| |||||| | | ||||||||||||||||||||||| ||||| | |||||||    
40180712 gagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacaga 40180784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 41885983 - 41885933
Alignment:
444 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaac 494  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||||||||    
41885983 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaac 41885933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 40181263 - 40181351
Alignment:
427 gcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttg 515  Q
    |||||||| |||| |  ||||||||||||||| ||||| ||||||||| | ||||| ||||||||||| || ||| | | |||||||||    
40181263 gcttgcagtgtatagtaatatgtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttg 40181351  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 411096 - 411026
Alignment:
329 gtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatat 399  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||    
411096 gtcatcgggaaggagggtttctggatgaagcagcatcttttgacagatagaagccgcttgctggagcatat 411026  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 410977 - 410925
Alignment:
445 tatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttc 497  Q
    |||||||||||||| || || ||||||||| ||||||||||||||||||||||    
410977 tatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaacttc 410925  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 9161423 - 9161370
Alignment:
444 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttc 497  Q
    |||||| ||||||||||| || ||||||||  ||||||||| ||||||||||||    
9161423 atatgtctcttgattcggaacacattgaaagacctcaaattaatgaaaaacttc 9161370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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