View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_high_12 (Length: 426)
Name: NF18124_high_12
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 1415243 - 1415426
Alignment:
| Q |
237 |
aagactcgtataatatattaattaataatgtcttaagctaataagaaaaaagat---gttgatttgtatgatgataggtggaggagtggaggagcagaga |
333 |
Q |
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| T |
1415243 |
aagactcgtataatatattaattaataatgtcttaagctaattagaaaaaagatcatgttgatttgtatgatgataggtggaggagtggaggagcagaga |
1415342 |
T |
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| Q |
334 |
agagcaaggtgaaagtgaggaggaaacttagagagccaaggttttgtttccagacaagaagtgatgtagatgtgcttgatgatg |
417 |
Q |
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| T |
1415343 |
agagcaaggtgaaagtgaggaggaaacttagagagccaaggttttgtttccagacaagaagtgatgtagatgtgcttgatgatg |
1415426 |
T |
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Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 1415009 - 1415175
Alignment:
| Q |
1 |
agatcccaaagctgtgagtgatgagaattgcactggaaatactagtgatggcaacaacacatggtagctccaaaagttaattgccaatttcaatgnnnnn |
100 |
Q |
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| T |
1415009 |
agatcccaaagctgtgagtgatgagaattgcactggaaatactagtgatggcaacaacacatggtagctccaaaagttaattgccaatttcaatgttttt |
1415108 |
T |
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| Q |
101 |
nncttctctctttcttataagtgcatgcacgtaatggacttcatatatatttaactcaaacaaatcatg |
169 |
Q |
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| T |
1415109 |
t--ttctctctttcttataagtgcatgcacgtaatagacttcatatatatttcactcaaacaaatcatg |
1415175 |
T |
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