View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_high_13 (Length: 421)
Name: NF18124_high_13
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 55823814 - 55823405
Alignment:
| Q |
1 |
atagaggtgatcgataaagaaataatgtaaaggatgaagatatagaataagaaacttacagataatatattgtcaatctgattttgtactctccagttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55823814 |
atagaggtgatcgataaagaaataatgtaaaggatgaagatatagaataagaaacttacagataatatattgtcaatctgattttgtactctccagttta |
55823715 |
T |
|
| Q |
101 |
aacaatcaaccaactgaaaacatgatcgatcgagatttgagaatataaatacattgagcaaaaaagagagttagagttgcacataccatttgataagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55823714 |
aacaatcaaccaactgaaaacatgatcgatcgagatttgagaatataaatacattgagcaaaaaagagagttagagttgcacataccatttgataagcct |
55823615 |
T |
|
| Q |
201 |
tagaaggatcacaatcccttgcttttagaaagcgagtcaagttttcagtgacatatccttgatggacattctgatcaatcattgagttgagaaattatt- |
299 |
Q |
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| T |
55823614 |
tagaaggatcacaatcccttgcttttagaaagcgagtcaagttttcagtgacatatccttgatgaacattctgatcaatcattgagttgagaaattatta |
55823515 |
T |
|
| Q |
300 |
--attactaattaagaatccaatatatttatttgatcaaaactaactaactaacctgaaaagttgtctgcaatgggtggtcaactttgatgattaattcc |
397 |
Q |
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| T |
55823514 |
ttattactaattaagaatccaatatatttatttgatcaaaactaactaactaacctgaaaagttgtctgcaatgggtggtcaactttgatgattaattcc |
55823415 |
T |
|
| Q |
398 |
tgcaactgat |
407 |
Q |
| |
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| T |
55823414 |
tgcaactgat |
55823405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 37 - 407
Target Start/End: Original strand, 56153653 - 56154030
Alignment:
| Q |
37 |
aagatatagaataagaaacttacagataatatattgtcaatctgattttgtactctccagtttaaacaatcaaccaactgaaaacatgatcgatcgagat |
136 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
56153653 |
aagaaatagaata-gaaacttacagataatatattgtcaatctgattttgtactctccagtttaaacaatcaaccaactgaaaacatgatc----gagat |
56153747 |
T |
|
| Q |
137 |
ttgagaatataaatacattgagcaaaaaagagagttagagttgcacataccatttgataagccttagaaggatcacaatcccttgcttttagaaagcgag |
236 |
Q |
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| T |
56153748 |
ttgagaatatacatacattgagaaaaaaagagagttagagttgcacataccatttgataagccttagaaggatcacaatcccttgcttttagaaagcgag |
56153847 |
T |
|
| Q |
237 |
tcaagttttcagtgacatatccttgatggacattctgatcaatcattgagttgagaa------------attattattactaattaagaatccaatatat |
324 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
56153848 |
tcaagttttcagtgacatatccttgatgaacattctgatcaatcattgagttgagaaattattattattattattattattaattaagaatccaatatat |
56153947 |
T |
|
| Q |
325 |
ttatttgatcaaaactaactaactaacctgaaaagttgtctgcaatgggtggtcaactttgatgattaattcctgcaactgat |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56153948 |
ttatttgatcaaaactaactaactaacctgaaaagttgtctgcaatgggtggtcaactttgatgattaattcctgcaactgat |
56154030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 9890337 - 9890428
Alignment:
| Q |
182 |
cataccatttgataagccttagaaggatcacaatcccttgcttttagaaagcgagtcaagttttcagtgacatatccttgatggacattctg |
273 |
Q |
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|||||||||| || ||||| |||| || || ||||||||||| ||||| ||| ||||| ||||||| |||| ||||||||| |||||||| |
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| T |
9890337 |
cataccattttatgcgcctttgaagcattccattcccttgctttcagaaaccgaatcaaggtttcagttacatgtccttgatgaacattctg |
9890428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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