View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_high_17 (Length: 351)

Name: NF18124_high_17
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_high_17
NF18124_high_17
[»] chr5 (1 HSPs)
chr5 (1-344)||(27371630-27371973)
[»] chr1 (9 HSPs)
chr1 (74-341)||(47764470-47764737)
chr1 (74-341)||(47772860-47773127)
chr1 (90-226)||(47713365-47713501)
chr1 (90-226)||(47745948-47746084)
chr1 (165-282)||(47756030-47756147)
chr1 (90-226)||(47718159-47718295)
chr1 (90-226)||(47760280-47760416)
chr1 (93-197)||(6507109-6507213)
chr1 (87-197)||(6500280-6500390)
[»] scaffold0341 (2 HSPs)
scaffold0341 (93-197)||(1134-1238)
scaffold0341 (93-197)||(8788-8892)


Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 27371973 - 27371630
Alignment:
Q  1 ttgtaatggctttgtttccctttgtttgttgtcttattgtcataattgtatcccaagccaaagccttatttgaatgtgataataacagaggcaactacac 100  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  27371973 ttgtaatggctctgtatccctttgtttgttgtcttattgtcataattgtatcccaagccaaagccatatttgaatgtgataataacagaggaaactacac 27371874  T
Q  101 agtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcatatggccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371873 agtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcatatggccaa 27371774  T
Q  201 caccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgtagaaacctaaacaattccattgcctatcttagagcaa 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371773 cacccagacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgtagaaacctaaacaattccattgcctatcttagagcaa 27371674  T
Q  301 agtgtccaaatcaaaaagaggccattttgtggggtgatgatgtc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27371673 agtgtccaaatcaaaaagaggccattttgtggggtgatgatgtc 27371630  T

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Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 47764470 - 47764737
Alignment:
Q  74 atgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactac 173  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | | |||||| |||||||| | |||| | || ||     
T  47764470 atgtgataacaacagaggcaattacacagccaatagcacctacgacaacaaccttaaaacccttttttccagtttttcttcccataaagaagtcaattat 47764569  T
Q  174 ggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgtagaaacctaa 273  Q
    ||||| ||||||||||||||||||||| |||| ||||||  | |  ||||||||||||| ||||||||||||||||| |||||||||| |  ||| ||||    
T  47764570 ggtttctacaatttctcatatggccaagaccccgacaaagcatacaccattgggttgtgccgcggagatcttgagccgaatcagtgtcttgcaaagctaa 47764669  T
Q  274 acaattccattgcctatcttagagcaaagtgtccaaatcaaaaagaggccattttgtggggtgatgat 341  Q
    ||||| ||||| ||| |||||||| | | |||||||||||||||||||| ||| ||||||||| ||||    
T  47764670 acaataccattccctttcttagagaacaatgtccaaatcaaaaagaggcgattgtgtggggtggtgat 47764737  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 47772860 - 47773127
Alignment:
Q  74 atgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactac 173  Q
    ||||||||| |||| |||||||||||||  |||||||||||| ||||||||||||||||| ||| | | |||| | ||||| || |||||||| ||||||    
T  47772860 atgtgataacaacataggcaactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactac 47772959  T
Q  174 ggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgtagaaacctaa 273  Q
    ||||| |||||||||||||||||| || | ||  |||||  | | | ||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  47772960 ggtttctacaatttctcatatggcgaagaaccaaacaaagcatatgtcataggggtgtgtcgcggagatattgagccaaatcagtgtcgtacaaacctaa 47773059  T
Q  274 acaattccattgcctatcttagagcaaagtgtccaaatcaaaaagaggccattttgtggggtgatgat 341  Q
    ||||||||||||  ||||| ||||   |||||||||| ||||||||||| ||| ||||||||| ||||    
T  47773060 acaattccattggttatctcagagagcagtgtccaaaccaaaaagaggcaattgtgtggggtggtgat 47773127  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 47713501 - 47713365
Alignment:
Q  90 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 189  Q
    ||||||||||||| ||||||||||||  | |||||||| || |||||| ||| || | || ||||| ||||  |||| ||||||||||| ||||||||||    
T  47713501 ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct 47713402  T
Q  190 catatggccaacaccctgacaaaataaaggccattgg 226  Q
    | ||||||||| || | |||||| |||| ||||||||    
T  47713401 cttatggccaaaacaccgacaaagtaaacgccattgg 47713365  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 47746084 - 47745948
Alignment:
Q  90 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 189  Q
    ||||||||||||| ||||||||||||  | |||||||| || |||||| ||| || | || ||||| ||||  |||| ||||||||||| ||||||||||    
T  47746084 ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct 47745985  T
Q  190 catatggccaacaccctgacaaaataaaggccattgg 226  Q
    | ||||||||| || |||| ||| |||| ||||||||    
T  47745984 cttatggccaaaacactgataaagtaaacgccattgg 47745948  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 47756030 - 47756147
Alignment:
Q  165 attaactacggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgta 264  Q
    |||||||| | ||| || |||||||||||||||||| |||| ||||||  | |||||| ||||||| ||| || |||||||||||||||| ||||| |||    
T  47756030 attaactatgatttctaaaatttctcatatggccaagacccagacaaagcataggccactgggttgcgtcacgtagatcttgagccaaataagtgttgta 47756129  T
Q  265 gaaacctaaacaattcca 282  Q
     ||||||| |||| ||||    
T  47756130 taaacctagacaagtcca 47756147  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 47718295 - 47718159
Alignment:
Q  90 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 189  Q
    ||||||||||||| ||||||||||||  | |||||||| |  |||||| | | || | |  ||||| |||||||||| ||||||||||| ||||||||||    
T  47718295 ggcaactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttct 47718196  T
Q  190 catatggccaacaccctgacaaaataaaggccattgg 226  Q
    | ||||||||| || |||||||| |||| ||| ||||    
T  47718195 cttatggccaaaacactgacaaagtaaacgccgttgg 47718159  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 47760416 - 47760280
Alignment:
Q  90 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 189  Q
    ||||||||||||| ||||||||||||  | |||||||| || ||| || | | || | |  ||||| || ||||||| ||||||||||| |||||| | |    
T  47760416 ggcaactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatattt 47760317  T
Q  190 catatggccaacaccctgacaaaataaaggccattgg 226  Q
    | ||||||||| || |||||||| |||| ||||||||    
T  47760316 cttatggccaaaacactgacaaagtaaacgccattgg 47760280  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 6507213 - 6507109
Alignment:
Q  93 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 192  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  6507213 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 6507114  T
Q  193 atggc 197  Q
    |||||    
T  6507113 atggc 6507109  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 6500390 - 6500280
Alignment:
Q  87 agaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatt 186  Q
    ||||| |||||||||   ||||||||||| ||||| ||||| || || ||| |||  | | || ||||| |||||||||| ||||||||||| |||||||    
T  6500390 agaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 6500291  T
Q  187 tctcatatggc 197  Q
    | ||| |||||    
T  6500290 tttcacatggc 6500280  T

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Target: scaffold0341 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 1238 - 1134
Alignment:
Q  93 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 192  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  1238 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 1139  T
Q  193 atggc 197  Q
    |||||    
T  1138 atggc 1134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 8892 - 8788
Alignment:
Q  93 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 192  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  8892 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 8793  T
Q  193 atggc 197  Q
    |||||    
T  8792 atggc 8788  T

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