View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_high_30 (Length: 241)
Name: NF18124_high_30
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 30952967 - 30952817
Alignment:
| Q |
16 |
agaacagaagttcaacatgattgaagcaatggagaacacccagaaagaagaatagcgttctgtgtttgatcctcccttcccttctatccatggtattaag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30952967 |
agaagagaagttcaacatgattgaagcaatggagaacacccagaaagaagaatagcgtt--gtgtttgatcctcccttcccttctatccatggtattaag |
30952870 |
T |
|
| Q |
116 |
tttgttagatgtgtgtgttgggtagcaagaaattagccacaaatgttgggtag |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30952869 |
tttgttagatgtgtgtgttgggtagcaagaaattagccacaaatgttgggtag |
30952817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University