View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_high_31 (Length: 234)

Name: NF18124_high_31
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_high_31
NF18124_high_31
[»] chr7 (1 HSPs)
chr7 (5-222)||(3417070-3417287)
[»] chr5 (2 HSPs)
chr5 (29-220)||(12541131-12541322)
chr5 (30-201)||(28385781-28385952)
[»] chr2 (3 HSPs)
chr2 (29-220)||(13440646-13440837)
chr2 (29-193)||(13448809-13448973)
chr2 (29-120)||(13455280-13455371)
[»] chr6 (1 HSPs)
chr6 (29-141)||(12589787-12589899)
[»] chr4 (4 HSPs)
chr4 (36-159)||(48958600-48958723)
chr4 (35-126)||(48962746-48962837)
chr4 (29-154)||(48911950-48912075)
chr4 (88-126)||(48974614-48974652)
[»] chr8 (1 HSPs)
chr8 (35-118)||(12641122-12641205)
[»] scaffold0536 (1 HSPs)
scaffold0536 (36-107)||(6163-6234)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 3417287 - 3417070
Alignment:
Q  5 tttctctagagtggttctccaaatagaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3417287 tttctctagagtggttctccaaatagaagatggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagt 3417188  T
Q  105 tcaatgaagttgttgacgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatgg 204  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417187 tcaatgaagttgttgacgataaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatgg 3417088  T
Q  205 tgataggaagaggaaagt 222  Q
    ||||||||||||||||||    
T  3417087 tgataggaagaggaaagt 3417070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 12541131 - 12541322
Alignment:
Q  29 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 128  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||  ||| ||    
T  12541131 agaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtag 12541230  T
Q  129 ccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa 220  Q
    ||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||||||||||||||||| || |||||||    
T  12541231 cctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatacgatgaggaaa 12541322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 28385781 - 28385952
Alignment:
Q  30 gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagc 129  Q
    |||| ||||||||||||||||||||||||||| | ||||||||| |||||||  | |||||||||||||||||||||||  |||||||||| |||| |||    
T  28385781 gaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttgatgatgtagc 28385880  T
Q  130 cattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcaca 201  Q
    |  ||||||||| ||| ||||||||||||| |||||||||  | ||||||||||||||||||||||| ||||    
T  28385881 ctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacaca 28385952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 13440646 - 13440837
Alignment:
Q  29 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 128  Q
    ||||| |||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||      
T  13440646 agaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgttgatgatgagt 13440745  T
Q  129 ccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa 220  Q
     | |||||||||| ||||||  ||||||||| |  || |||||| || |  |||||||| ||||| | ||||| ||| ||| || |||||||    
T  13440746 gctttacttttgagcactgtcccaagcatcatttttaggaatttgctaattacctttggcggttttccgcacaaggttatacgatgaggaaa 13440837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 13448809 - 13448973
Alignment:
Q  29 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 128  Q
    ||||| |||||||||||||||| |||||||||| | || |||||| |||||||| || ||||||||||||||||||||| |||||||||||| ||| |      
T  13448809 agaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttgatgattagt 13448908  T
Q  129 ccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggttt 193  Q
     | |||||||| | ||| || |||||||||| ||| |||||| ||| ||  |||||||| |||||    
T  13448909 gctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggcggttt 13448973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 13455280 - 13455371
Alignment:
Q  29 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 120  Q
    ||||| |||||||| ||||||| ||||||||||||  ||||| || |||||||| || |||||||||||||||| |||| ||||||||||||    
T  13455280 agaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttga 13455371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 12589899 - 12589787
Alignment:
Q  29 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 128  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||||||||  ||||||||| || ||||      
T  12589899 agaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagt 12589800  T
Q  129 ccattacttttga 141  Q
    |||||||||||||    
T  12589799 ccattacttttga 12589787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 48958600 - 48958723
Alignment:
Q  36 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattac 135  Q
    ||||||||||||||| |||||||||| | | ||||||  |||||||  || |||||||| ||||||||||||||||||||||||| |||||  || ||||    
T  48958600 ggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttac 48958699  T
Q  136 ttttgaacactgtgtcaagcatca 159  Q
    ||||||  | ||| ||||||||||    
T  48958700 ttttgaggattgtctcaagcatca 48958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 48962746 - 48962837
Alignment:
Q  35 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatga 126  Q
    |||||| |||||||||||||||||||| | ||||||||| |||||||  || |||||||| || |||||||||  |||||||||||| ||||    
T  48962746 tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatga 48962837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 48912075 - 48911950
Alignment:
Q  29 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 128  Q
    ||||| |||||||||||||||||| |||||||  |  |||||||| |||||||  ||| ||||||| || |||||||||   || |||||||| | ||      
T  48912075 agaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggatt 48911976  T
Q  129 ccattacttttgaacactgtgtcaag 154  Q
    || ||||||||||| ||||| |||||    
T  48911975 ccgttacttttgaaaactgtctcaag 48911950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 48974614 - 48974652
Alignment:
Q  88 actcttctccatcaagttcaatgaagttgttgacgatga 126  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48974614 actcttctccatcaagctcagtgaagttgttgacgatga 48974652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 12641205 - 12641122
Alignment:
Q  35 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgtt 118  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||  || || ||||| |||||||||||||  ||||||||    
T  12641205 tggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 6234 - 6163
Alignment:
Q  36 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttca 107  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||  ||  ||||||| || |||||||||    
T  6234 ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University