View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_high_34 (Length: 211)
Name: NF18124_high_34
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_high_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 1316474 - 1316596
Alignment:
| Q |
89 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccgggcactctatcactcctagttgttatatttggaagcctattttcataa |
188 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccaggcactctatcactcctagttgttatatttggaagcctattttcataa |
1316573 |
T |
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| Q |
189 |
actcaaggtcacgggaatgcctc |
211 |
Q |
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| T |
1316574 |
actcaaggtcacgggaatgcctc |
1316596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1316343 - 1316434
Alignment:
| Q |
1 |
aaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
92 |
Q |
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| T |
1316343 |
aaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgcaattttacataaacatattgtccagagcctaa |
1316434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 43486621 - 43486726
Alignment:
| Q |
107 |
actagtttttccagcattatctccctgcctcccgggc--actctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
204 |
Q |
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| T |
43486621 |
actagtttttccagcattatctccctgcctcctggtcccactctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
43486720 |
T |
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| Q |
205 |
atgcct |
210 |
Q |
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| T |
43486721 |
atgcct |
43486726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 43486463 - 43486549
Alignment:
| Q |
6 |
gactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
92 |
Q |
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| T |
43486463 |
gactattgaagcaattaatgtatttgacttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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