View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_high_8 (Length: 475)
Name: NF18124_high_8
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Complemental strand, 13308962 - 13308504
Alignment:
| Q |
17 |
aggaccaagaaagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaacatatacccattccgacagaacagaggcaaaatcaatagg |
116 |
Q |
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| T |
13308962 |
aggaccaagaaagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaacatatacccattccgacagaacagaggcaaaatcaatagg |
13308863 |
T |
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| Q |
117 |
ataagacgcaataacatcaactttggcaggactatttggataagttacaaacacactcaagtcttttgaggcagtattataacttatgcgagcctttcct |
216 |
Q |
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| T |
13308862 |
ataagacacaataacatcaactttggcaggactatttggataagttacaaatacactcaagtcttttgaggcagtattataacttatgcgagcctttcct |
13308763 |
T |
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| Q |
217 |
atcgttccttgaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagttagggtcccatt |
316 |
Q |
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| T |
13308762 |
atcgttccttgaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagttagggtcccatt |
13308663 |
T |
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| Q |
317 |
catttgcaaaactatcaaactcgacggcaacgattgagtttttggaggtattgaaggcagtttctttatcaaaaagtccaaggaatccaccatccgatga |
416 |
Q |
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| T |
13308662 |
catttgcaaaactatcaaactcgacggcaacgattgagtttttggaggtattgaaggcagtttctttatcaaaaagtccaaggaatccaccatccgatga |
13308563 |
T |
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| Q |
417 |
attttcgggaaaatcgtaatctaatgatgctatatagaatgcgaaaccatctccgtgaa |
475 |
Q |
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| T |
13308562 |
tttttcgggaaaatcataatctaatgatgctatatagaatgcgaaaccatctccgtgaa |
13308504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 13334128 - 13333671
Alignment:
| Q |
19 |
gaccaagaaagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaacatatacccattccgacagaacagaggcaaaatcaataggat |
118 |
Q |
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| T |
13334128 |
gaccatgaaagaatgtcatgtgtttcggcaagttcacctgtggcaccggagaaaccaaccaggacatattcgggcagaatagccgcaaaatcaacagtat |
13334029 |
T |
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| Q |
119 |
aagacgcaataacatcaactttggcaggactatttggataagttacaaacacactcaagtcttttgaggcagtattataacttatgcgagcctttcctat |
218 |
Q |
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| T |
13334028 |
aagatacagcagtttcctctatgacaggaccatttagataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctat |
13333929 |
T |
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| Q |
219 |
cgttccttgaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagtt------------a |
306 |
Q |
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| T |
13333928 |
cgatccttctggtacacgatcgattggccatagagcagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagttacctgcgatttga |
13333829 |
T |
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| Q |
307 |
gggtcccattcatttgcaaaactatcaaactcgacggcaacgattgagtttttggaggtattgaaggcagtttctttatcaaaaagtccaaggaatccac |
406 |
Q |
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| T |
13333828 |
ggatcccattcatttctaaaactatcaaactcaaccgcaacaatggagttttgggaggtattgaacgcggattctttatcgaaaagtccaaggaatccac |
13333729 |
T |
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| Q |
407 |
catccgatgaattttcgggaaaatcgtaatctaatgatgctatatagaatgcgaaacc |
464 |
Q |
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| T |
13333728 |
catcggatgatttctctgggaactcataatctaacgatgcgataaagaatgtgaaacc |
13333671 |
T |
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