View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_10 (Length: 471)
Name: NF18124_low_10
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 159 - 388
Target Start/End: Complemental strand, 25226449 - 25226215
Alignment:
| Q |
159 |
cactgatattgagtcaaattagagtgaatcctatcagtttaatgtactgttggacaacattaaactcaacaaataagaaaagaggtgattatgaaaagaa |
258 |
Q |
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| T |
25226449 |
cactgatgatgagtaaatttcgagtgaatcctaacagtttaatgttttgttggaaaacattaaattcacagaataatagaagaggtagtggtgaaaagca |
25226350 |
T |
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| Q |
259 |
ttgggcacagc-----catgtgagcttactataactatcaaacaggaacggaaaattttcttcaaaaagtaatttggcaaatgtttctttttcaatcatc |
353 |
Q |
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| T |
25226349 |
ttggccacagcactgccatgtgaggttactataactatcaaacaggaatggaaaaatttctttaaaaagtaatttggcaaatgtttctttttcaatcatc |
25226250 |
T |
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| Q |
354 |
aaaagaatttaagggaacacaagtaaattataaaa |
388 |
Q |
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| T |
25226249 |
aagagaagttaagggaacacaagtaaattttaaaa |
25226215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 25226568 - 25226443
Alignment:
| Q |
13 |
aatatatgtaaaacaa-gagagaatgtattcagcttgcagatggtcttactacaaagcaaacaattaattgctacacaattttaagcggacaaaagcaat |
111 |
Q |
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| T |
25226568 |
aatatatgtaaaacaaagagagcgtgcattcagcttgcagatggtcttactacaaagaaaacaattaattgctacacaatttcaagctgacagaagcaat |
25226469 |
T |
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| Q |
112 |
cctggcagcacattcagcgcactgat |
137 |
Q |
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| T |
25226468 |
cctagcagcacattcagcacactgat |
25226443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 348
Target Start/End: Original strand, 32266674 - 32266761
Alignment:
| Q |
261 |
gggcacagccatgtgagcttactataactatcaaacaggaacggaaaattttcttcaaaaagtaatttggcaaatgtttctttttcaa |
348 |
Q |
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| T |
32266674 |
gggcacaaccatgtgagcgtagtataactatcaaacaggaacagaaaaaattctccaaaaagtaatttggaaaatctttctttatcaa |
32266761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 38123971 - 38123900
Alignment:
| Q |
317 |
aaaaagtaatttggcaaatgtttctttttcaatcatcaaaagaatttaagggaacacaagtaaattataaaa |
388 |
Q |
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| T |
38123971 |
aaaaagtaatttggaaaatgtctctttctcaatcatcaagagaagttaagggaacacatgtaaattttaaaa |
38123900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 38115820 - 38115747
Alignment:
| Q |
250 |
tgaaaagaattgggcacagccatgtgagcttactataactatcaaac-aggaacggaaaattttcttcaaaaag |
322 |
Q |
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| T |
38115820 |
tgaaaagcaatgggcactgccatgtgagcttaccataactatcaaactaggaacagaaaattttcttgaaaaag |
38115747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 38115990 - 38115891
Alignment:
| Q |
39 |
attcagcttgcagatggtcttactacaaagcaaacaattaattgctacacaattttaagcggacaaaagcaatcctggcagcacattcagcgcactgata |
138 |
Q |
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| T |
38115990 |
attcagcttacagatggtcatactacagagaaaacaattaattgctacacattttcaaaccgacagaatcaacccaaggagcacattcagcagactgata |
38115891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 38124111 - 38124026
Alignment:
| Q |
159 |
cactgatattgagtcaaattagagtgaatcctatcagtttaatgtactgttggacaacattaaactcaacaaataagaaaagaggt |
244 |
Q |
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| T |
38124111 |
cactgatattgaataaaatttgagtgaatcctaacagtataatgcttcgttggacaacattaaattaacaaaataataaaagaggt |
38124026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 43721758 - 43721810
Alignment:
| Q |
13 |
aatatatgtaaaacaagagagaatgtattcagcttgcagatggtcttactaca |
65 |
Q |
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| T |
43721758 |
aatatatctaaaacaagagagtatggattcagcttgcagatggtcgtactaca |
43721810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 43721981 - 43722027
Alignment:
| Q |
262 |
ggcacagccatgtgagcttactataactatcaaacaggaacggaaaa |
308 |
Q |
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| T |
43721981 |
ggcacagccatatgagcttactatatctatcaaacaggaacagaaaa |
43722027 |
T |
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