View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_low_15 (Length: 384)

Name: NF18124_low_15
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_low_15
NF18124_low_15
[»] chr8 (16 HSPs)
chr8 (51-373)||(7321477-7321795)
chr8 (1-373)||(29771752-29772126)
chr8 (1-373)||(29757602-29757977)
chr8 (1-370)||(28800877-28801249)
chr8 (257-370)||(18528145-18528258)
chr8 (217-373)||(19008097-19008252)
chr8 (2-58)||(18528383-18528439)
chr8 (1-64)||(6589768-6589830)
chr8 (28-76)||(18564877-18564925)
chr8 (2-74)||(33925872-33925943)
chr8 (1-48)||(20084925-20084972)
chr8 (1-60)||(10649824-10649883)
chr8 (214-315)||(18565067-18565165)
chr8 (29-72)||(19007905-19007948)
chr8 (104-165)||(19007982-19008044)
chr8 (6-59)||(29231505-29231557)
[»] chr3 (12 HSPs)
chr3 (5-373)||(8109396-8109766)
chr3 (94-373)||(17034508-17034789)
chr3 (1-143)||(4244091-4244236)
chr3 (1-61)||(19264280-19264339)
chr3 (96-186)||(4514452-4514543)
chr3 (296-373)||(27406005-27406082)
chr3 (225-276)||(19905645-19905696)
chr3 (2-60)||(4507800-4507858)
chr3 (30-64)||(31779329-31779363)
chr3 (11-64)||(12124672-12124725)
chr3 (28-60)||(12759106-12759138)
chr3 (32-60)||(19307312-19307340)
[»] chr1 (20 HSPs)
chr1 (104-373)||(31584374-31584644)
chr1 (105-364)||(25791520-25791778)
chr1 (1-373)||(15440385-15440746)
chr1 (105-365)||(14580718-14580980)
chr1 (253-373)||(16636981-16637101)
chr1 (297-373)||(34187881-34187957)
chr1 (269-365)||(41029232-41029328)
chr1 (1-72)||(16534044-16534115)
chr1 (1-87)||(31587272-31587361)
chr1 (1-165)||(17088885-17089052)
chr1 (1-189)||(21721357-21721548)
chr1 (6-71)||(20758523-20758587)
chr1 (2-70)||(11104996-11105064)
chr1 (1-61)||(14969043-14969102)
chr1 (196-275)||(17316537-17316617)
chr1 (1-61)||(23486228-23486286)
chr1 (1-61)||(9558621-9558680)
chr1 (96-143)||(19965549-19965596)
chr1 (1-76)||(30497611-30497684)
chr1 (1-53)||(43283020-43283071)
[»] chr2 (12 HSPs)
chr2 (1-373)||(22268364-22268738)
chr2 (228-369)||(13073564-13073705)
chr2 (98-188)||(19878303-19878393)
chr2 (1-79)||(27760747-27760824)
chr2 (2-74)||(13112760-13112832)
chr2 (1-61)||(24109858-24109917)
chr2 (96-188)||(42256057-42256149)
chr2 (1-61)||(26704223-26704282)
chr2 (325-373)||(17569586-17569634)
chr2 (32-60)||(21748890-21748918)
chr2 (9-61)||(24109669-24109720)
chr2 (32-60)||(27765978-27766006)
[»] chr7 (16 HSPs)
chr7 (1-373)||(8259051-8259422)
chr7 (1-60)||(5075752-5075810)
chr7 (4-79)||(28980893-28980967)
chr7 (308-373)||(4031519-4031584)
chr7 (96-143)||(10647064-10647112)
chr7 (1-53)||(23800014-23800065)
chr7 (96-131)||(12733444-12733479)
chr7 (30-60)||(8309715-8309745)
chr7 (214-277)||(17891508-17891573)
chr7 (104-188)||(7561225-7561309)
chr7 (308-373)||(24865386-24865451)
chr7 (31-60)||(26454143-26454172)
chr7 (32-72)||(4031823-4031863)
chr7 (32-60)||(10647149-10647177)
chr7 (32-60)||(19141957-19141985)
chr7 (32-60)||(20741356-20741384)
[»] chr6 (8 HSPs)
chr6 (214-370)||(6561056-6561212)
chr6 (1-132)||(6561275-6561408)
chr6 (277-364)||(11130807-11130895)
chr6 (1-79)||(15586262-15586339)
chr6 (96-373)||(17291330-17291610)
chr6 (1-61)||(30701759-30701819)
chr6 (32-318)||(29031694-29031983)
chr6 (1-47)||(21946535-21946581)
[»] chr5 (18 HSPs)
chr5 (96-362)||(17338135-17338402)
chr5 (214-363)||(19642072-19642221)
chr5 (214-365)||(31730435-31730586)
chr5 (243-369)||(20690016-20690142)
chr5 (1-61)||(22185632-22185692)
chr5 (214-373)||(25936276-25936434)
chr5 (1-72)||(19642371-19642441)
chr5 (2-61)||(20689783-20689841)
chr5 (1-185)||(12860056-12860242)
chr5 (23-64)||(18325806-18325847)
chr5 (260-369)||(19692420-19692529)
chr5 (1-64)||(19903215-19903278)
chr5 (29-72)||(25936573-25936616)
chr5 (1-72)||(31218224-31218294)
chr5 (1-60)||(36740708-36740767)
chr5 (3-61)||(6037692-6037749)
chr5 (32-60)||(22820979-22821007)
chr5 (217-290)||(26013611-26013685)
[»] chr4 (10 HSPs)
chr4 (214-336)||(20245262-20245383)
chr4 (1-60)||(12235893-12235952)
chr4 (1-64)||(15521945-15522008)
chr4 (1-61)||(46342581-46342641)
chr4 (1-60)||(20243620-20243678)
chr4 (4-79)||(12190801-12190874)
chr4 (1-60)||(13977679-13977738)
chr4 (32-66)||(14116432-14116466)
chr4 (226-277)||(18445832-18445885)
chr4 (32-60)||(26621190-26621218)
[»] scaffold0804 (1 HSPs)
scaffold0804 (105-365)||(435-697)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-70)||(8185-8254)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-61)||(135753-135812)
[»] scaffold1190 (1 HSPs)
scaffold1190 (1-64)||(920-982)
[»] scaffold0514 (1 HSPs)
scaffold0514 (6-64)||(6897-6954)
[»] scaffold0329 (1 HSPs)
scaffold0329 (30-140)||(4018-4132)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 51 - 373
Target Start/End: Complemental strand, 7321795 - 7321477
Alignment:
Q  51 agaggtgtaatcaactacaaaacatagtatgattcttcttagaattttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatt 150  Q
    |||||||||||||||| ||||||||||||||| ||||   |||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||    
T  7321795 agaggtgtaatcaacttcaaaacatagtatgactctt---agaattttctaagatctgaacttagtaagaaattcttaagtgtttatgcacttcaaaatt 7321699  T
Q  151 tgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtttcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtg 250  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  7321698 tgacaaagtaagggcccaagttaaaattgcagagtcttgttatgtttcaagtctttaacttctt-atataaggaaggatttgagagacgttggagaagtg 7321600  T
Q  251 ttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgct 350  Q
    | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7321599 tcagcgtattaagagtccttgagaagcaatcaaatcaagatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgct 7321500  T
Q  351 gcaaatagaattatctgtttcat 373  Q
    |||||||||||||||||||||||    
T  7321499 gcaaatagaattatctgtttcat 7321477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 29772126 - 29771752
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt----cttagaatt 96  Q
    ||||| |||||||||| ||||| |||| |||| |||||||||||||  |||||| ||||||||| ||||||| | || | || |||     |||||||||    
T  29772126 taactcaatcaaataaaagattatttggtttt-acacttgatatactgtcagagatgtaatcaattacaaaatagagcaagactctaaagacttagaatt 29772028  T
Q  97 ttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt 196  Q
    | |||| ||||||||||||| | | ||||||||||||||| ||||||  |||||||||| ||||||| | ||||||||||||| ||||||||| | ||||    
T  29772027 t-ctaagatatgaacttagtaaaacattcttaagtgtttacgcgcttttaaatttgacagagtaagg-cacaagttaaaattgaagagtcttgttgtgtt 29771930  T
Q  197 --tcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgtt 294  Q
      ||||||||| | ||  || |||||  |||| |||||| ||||||||||||| ||| || ||||||||||| |||||||| | |||||||||||| |||    
T  29771929 cttcaagtcttcatctcctt-atatagagaagtatttgagagacgttggagaaatgtcagtgcattaagagttcttgagaacctatcaaatcaagacgtt 29771831  T
Q  295 ggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |||||||||| || ||||||||||    |||||||||||||   ||| | |||||||||| ||||||||||||||||||    
T  29771830 ggaatgttgcctggtatggttaatgttgtttgaaaagacatctgaaacccattgctgcaagtagaattatctgtttcat 29771752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 29757977 - 29757602
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattct----tcttagaatt 96  Q
    ||||||||||| |||| | ||| |||| |||| ||||||||||| |||| |||||||||||||| ||||||| | || | || | |     |||| || |    
T  29757977 taacttaatcagataaaatattatttggtttt-acacttgatattcaattagaggtgtaatcaattacaaaatagagaaagactttaaagacttataa-t 29757880  T
Q  97 ttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgt- 195  Q
    |||||| |||  |||||||| | |||   |||||| |||||| ||||  |||||||| | ||||||||| ||||||||| ||| ||||||||| | |||     
T  29757879 ttctaagatacaaacttagtaaaaaaaaattaagtatttatgtgcttttaaatttgatagagtaagggcacaagttaaagttgaagagtcttgttgtgtt 29757780  T
Q  196 -ttcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgtt 294  Q
     |||||||||| | | |  |||||||  ||||||||||| ||||||||||||||| | || |||||||||||| ||||||| | ||||||| |||| |||    
T  29757779 cttcaagtcttgatc-tccttatatagagaaggatttgagagacgttggagaagtatcagtgcattaagagtcattgagaacctatcaaataaagacgtt 29757681  T
Q  295 ggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    ||||| |||| |||||||||||||  ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||    
T  29757680 ggaattttgcctgatatggttaatgtcatttgaaaagacattcgaaatccatggctgcaaatagaattatatgtttcat 29757602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 28801249 - 28800877
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattcttc-----ttagaat 95  Q
    |||||||||||||||| |||||||||| |||| |||||| ||||||||| || |||||||  || ||||||||| |||| |||||||      |||||||    
T  28801249 taacttaatcaaataa-agattgtttggtttt-acacttcatatacaattaggggtgtaagaaattacaaaacaaagtaagattcttaagactttagaat 28801152  T
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgat-atg 194  Q
    ||  ||| |||||||||| || ||||||||| |||| |||| ||||||   ||||||||| ||||||||| |  ||||||| |||||||| ||| | ||     
T  28801151 tta-taagatatgaacttggtaagaaattctcaagtatttacgcgcttttgaatttgacagagtaagggcacttgttaaaactgcagagttttgtttatt 28801053  T
Q  195 t-ttcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgt 293  Q
    | |||||||||| | ||  || | ||| ||| |||     |||| |||||||| ||   ||| ||||||||||| ||||||||   ||||||||||| ||    
T  28801052 tcttcaagtcttcagctcctt-acatagggatggaaacactagatgttggagaggttcgagcacattaagagtctttgagaagttttcaaatcaagacgt 28800954  T
Q  294 tggaatgttgcatgatatggttaataccatttgaaaagaca-ttcaaaatctattgctgcaaatagaattatctgttt 370  Q
    ||||||||||  |||||||||||||    |||||||||||| || |||||| |||| ||||| |||||||||||||||    
T  28800953 tggaatgttgtctgatatggttaatgttgtttgaaaagacatttgaaaatc-attgttgcaattagaattatctgttt 28800877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 370
Target Start/End: Complemental strand, 18528258 - 18528145
Alignment:
Q  257 cattaagagtccttgagaagccatcaaatcaa-gatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaa 355  Q
    ||||||||||| ||||||||| |||||||||| || ||||||||||| | ||| ||| ||||| |||||||||||||||||| ||||| | | || | ||    
T  18528258 cattaagagtctttgagaagc-atcaaatcaaagacgttggaatgtttcctgacatgattaatgccatttgaaaagacattcgaaatccactcctactaa 18528160  T
Q  356 tagaattatctgttt 370  Q
    |||||||||||||||    
T  18528159 tagaattatctgttt 18528145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 19008097 - 19008252
Alignment:
Q  217 tataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagat-gttggaatgttgcatgatatggtt 315  Q
    |||||| |||||||||| |||||||||||| || | |||||||||||| || ||||||||   |||||||||  | ||||||||||||| ||||||| ||    
T  19008097 tataagtaaggatttgagagacgttggaga-gtttcagcgcattaagattcgttgagaagtt-tcaaatcaaagtcgttggaatgttgcctgatatgatt 19008194  T
Q  316 aataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |||  ||||| || |||||||| ||||  || | ||||||||||||||| ||||||||    
T  19008195 aatgtcattttaagagacattcgaaattcatggttgcaaatagaattatttgtttcat 19008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 18528439 - 18528383
Alignment:
Q  2 aacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgt 58  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  18528439 aacttaatcaaataaaagattgtttgatttttatacttgatatacaatgagaggtgt 18528383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6589830 - 6589768
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||    
T  6589830 taacttaatcaaataa-agatcgtttgagttttacatttgatatacaatcagaggtgtaatcaa 6589768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 18564877 - 18564925
Alignment:
Q  28 atttttacacttgatatacaatcagaggtgtaatcaactacaaaacata 76  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  18564877 atttttacacttgatatacaatcagaggtgtaaacaattacaaaacata 18564925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 33925943 - 33925872
Alignment:
Q  2 aacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaaca 74  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||  |||| ||| |||||||||    
T  33925943 aacttaatcaaataaaagattgtttga-ttttacacttaatatacaatcagagaggtaaacaaatacaaaaca 33925872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20084925 - 20084972
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaa 48  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||    
T  20084925 taacttaatcaaataaaaggttgtttgatttttacacttgatatacaa 20084972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10649883 - 10649824
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    ||||||||| |||||| | ||| |||| ||||||||||||||||||||||| | ||||||    
T  10649883 taacttaataaaataaaatattatttggtttttacacttgatatacaatcaaaagtgtaa 10649824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 18565067 - 18565165
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaag-atgttggaatgttgcatgatatg 312  Q
    ||||||| | |||||||||| ||| |||||||| ||| ||||  |||||||||| ||||||| | ||||||| ||| |||||||||||||| ||||||||    
T  18565067 ttatataggcaaggatttgagagatgttggaga-gtgctagc--attaagagtcgttgagaaac-atcaaataaaggatgttggaatgttgtatgatatg 18565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 19007905 - 19007948
Alignment:
Q  29 tttttacacttgatatacaatcagaggtgtaatcaactacaaaa 72  Q
    |||||||||||||||||||||||||||||||  ||| |||||||    
T  19007905 tttttacacttgatatacaatcagaggtgtagacaattacaaaa 19007948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 19007982 - 19008044
Alignment:
Q  104 atatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaaagtaagggc 165  Q
    ||||||||||||| ||||||||||| ||||| |||||| ||  |||||||||| |||||||||    
T  19007982 atatgaacttagtaagaaattcttatgtgttctatgcggttttaaatttgacatagtaagggc 19008044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 29231505 - 29231557
Alignment:
Q  6 taatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgta 59  Q
    ||||||||||| |||||||||| |||| |||||| ||||| |||||||||||||    
T  29231505 taatcaaataaaagattgtttggtttt-acactttatatataatcagaggtgta 29231557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 8109396 - 8109766
Alignment:
Q  5 ttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt----cttagaattttct 100  Q
    |||||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||| |||||| || | || || ||||    |||||||||| |     
T  8109396 ttaatcaaataaaagattgtttggtttt-acacttgatatagaatcagaggtgtaatcaattacaaagcagaataagactcttaagacttagaatttcc- 8109493  T
Q  101 aatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tc 198  Q
    || ||||||||||||| ||| |||||||| ||||||||| |||  |||||||||| ||||   || |||||||||||| |||||||||| | ||||  ||    
T  8109494 aagatatgaacttagtaagagattcttaactgtttatgcacttttaaatttgacagagtacatgcacaagttaaaattacagagtcttgttttgttcttc 8109593  T
Q  199 aagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaa 298  Q
    |||| ||||||| |||| ||||  ||||||||||| |||||||||||| |||  | | |||||| |||| |||||||||  ||||||||||| || ||||    
T  8109594 aagtatttaactctttt-tatagagaaggatttgagagacgttggaga-gtgccaacacattaacagtctttgagaagctttcaaatcaagacgtaggaa 8109691  T
Q  299 tgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |||||| | ||||||||||| |||||||||||||||||  ||||| ||| ||||||||| ||||||| |||||||    
T  8109692 tgttgcctaatatggttaatgccatttgaaaagacatttgaaatccattcctgcaaatataattatccgtttcat 8109766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 94 - 373
Target Start/End: Complemental strand, 17034789 - 17034508
Alignment:
Q  94 attttctaatatatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgata 192  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||||| | ||||||| | ||||||| | |  ||||||||  || ||||||| ||    
T  17034789 attttctaagatatgaacttagtaagaaattcttaagtgttctatgcgctttagaatttgatagagtaaggccacc-gttaaaataacaaagtcttgtta 17034691  T
Q  193 tgtttc---aagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatca-a 288  Q
    |  |||   ||||||| ||||  || ||||| | |||||||||| |||||||||||| |||  | ||||||||||||| |||||||| | || ||||| |    
T  17034690 ttattcttcaagtcttaaactcctt-atataggcaaggatttgagagacgttggagaggtgacaacgcattaagagtcgttgagaag-cttcgaatcata 17034593  T
Q  289 gatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    || ||||||||||||| |||||||||||||  | || | | ||| |||||||||  |||||||||| ||||||||||||||||||    
T  17034592 gacgttggaatgttgcctgatatggttaatgtcgttggtagagatattcaaaattcattgctgcaagtagaattatctgtttcat 17034508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4244091 - 4244236
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt----cttagaatt 96  Q
    |||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||| ||| ||||||| | |||| || | ||    |||   | |    
T  4244091 taacttaatcaaataaaatgttgtttg-tttttacacttgatatacaatcagaggtgtaaacaattacaaaatagagtaagacttttaagactttataat 4244189  T
Q  97 ttctaatatatgaacttagtgagaaattcttaagtgtttatgcgctt 143  Q
    |||||| |||  ||||| || ||||||||||||||||||||||||||    
T  4244190 ttctaagataaaaacttcgtaagaaattcttaagtgtttatgcgctt 4244236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19264280 - 19264339
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  19264280 taacttaatcaaataaaagattgtttga-ttttacacttaatatacaatcagaggtgtaat 19264339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 4514452 - 4514543
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtc 186  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||| ||||   ||||| ||| ||||||||| ||| ||||||| ||||||||    
T  4514452 tttctaacatatgaacttagtaagaaattcttaagtgttctatgtgcttttgaatttaacagagtaagggcacaatttaaaatagcagagtc 4514543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 27406082 - 27406005
Alignment:
Q  296 gaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    ||||||||  ||||||||| |||  | |||||| |||||||| ||| | ||| |||||||||||||||||||||||||    
T  27406082 gaatgttgtctgatatggtgaatgtcgtttgaagagacattcgaaagccatttctgcaaatagaattatctgtttcat 27406005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 19905645 - 19905696
Alignment:
Q  225 aggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaag 276  Q
    ||||||||| |||||||||||| |||  ||||||||||||||| ||||||||    
T  19905645 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag 19905696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 4507800 - 4507858
Alignment:
Q  2 aacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    ||||||||||||||| ||||| | ||   |||||||||||| |||||||||||||||||    
T  4507800 aacttaatcaaataaaagattttatgtgatttacacttgatgtacaatcagaggtgtaa 4507858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 31779329 - 31779363
Alignment:
Q  30 ttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||||||||||||||||||| ||||||||||||    
T  31779329 ttttacacttgatatacaatcaaaggtgtaatcaa 31779363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 12124725 - 12124672
Alignment:
Q  11 aaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||| ||||||||||| |||||   ||||||||||||||||| |||||||||    
T  12124725 aaataaaagattgtttgaattttaagtttgatatacaatcagagatgtaatcaa 12124672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 12759106 - 12759138
Alignment:
Q  28 atttttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||| ||||||||||    
T  12759106 atttttacacttgatatacaattagaggtgtaa 12759138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 19307340 - 19307312
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  19307340 ttacacttgatatacaatcagaggtgtaa 19307312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 104 - 373
Target Start/End: Complemental strand, 31584644 - 31584374
Alignment:
Q  104 atatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaag 201  Q
    ||||||||||||| | ||||||||||||||||||||||||   ||||||| | |||| || | ||||||||||||  | |||||||    |||  |||||    
T  31584644 atatgaacttagtaataaattcttaagtgtttatgcgcttttgaatttgatagagtacggacacaagttaaaattagaaagtcttgtagagttcttcaag 31584545  T
Q  202 tctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgt 301  Q
    |||| |  ||  ||||||| | || || |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31584544 tcttcag-ttccttatatatgcaatgaattgagagacgttggagaagtgtcagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgt 31584446  T
Q  302 tgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    ||  ||||| |||||||  | || |||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  31584445 tgtctgatacggttaatgtcgttcgaaaagacattcgaaatctattgctgcaaatagaatcatccgtttcat 31584374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 364
Target Start/End: Complemental strand, 25791778 - 25791520
Alignment:
Q  105 tatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaagt 202  Q
    |||||||||||| | ||||||| |||||||| |||||||   ||||| ||||||||| ||| ||||||||||||  ||||||||  |  |||  ||||||    
T  25791778 tatgaacttagtaa-aaattct-aagtgtttttgcgcttttgaatttcacaaagtaaaggcacaagttaaaattatagagtcttatttagttcttcaagt 25791681  T
Q  203 ctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgtt 302  Q
    ||| ||||| || ||||| | | |||||||| |||||||||| |||||| | | ||||||||||||||||||||| |||||||||||| |||||||| ||    
T  25791680 cttcaacttctt-atataggcatggatttgagagacgttggaaaagtgtcaactcattaagagtccttgagaagctatcaaatcaagacgttggaatatt 25791582  T
Q  303 gcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattat 364  Q
    || ||||||| |||||    ||||||||||||||| ||||||||| | ||||||||||||||    
T  25791581 gcctgatatgattaatgttgtttgaaaagacattcgaaatctattacagcaaatagaattat 25791520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 15440385 - 15440746
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattcttcttagaattttct 100  Q
    ||||| |||||||||| | ||||||| | |||||||||||||||||||||| |||||||| ||| ||||||| || ||| ||     ||||||| ||  |    
T  15440385 taactaaatcaaataaaaaattgttt-agttttacacttgatatacaatcataggtgtaaacaaatacaaaatatggtaaga-----cttagaagtta-t 15440477  T
Q  101 aatatatgaacttagtgagaaa---ttcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt- 196  Q
    || |||| |||||||  | |||   |||||||||||||| |||||  ||| ||||||| | |||| || | ||||||||| ||| ||||||  | ||||     
T  15440478 aagatataaacttagaaaaaaaaaattcttaagtgtttacgcgctataaattttgacagaataagagcactagttaaaatagcaaagtcttattgtgttc 15440577  T
Q  197 -tcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttg 295  Q
     ||||||||| | ||  || ||||| | || ||||||| |||| |||||||||||| || |||||||||||| ||||||||| |||||||||||||||||    
T  15440578 ttcaagtcttcagctcctt-atataggcaaagatttgagagacattggagaagtgtcagtgcattaagagtctttgagaagctatcaaatcaagatgttg 15440676  T
Q  296 gaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |||||||         |||| ||  | ||||||||||||| | || || |||||||||||||||||||||||||||||    
T  15440677 gaatgtt--------cggttgatgtcttttgaaaagacataccaagtccattgctgcaaatagaattatctgtttcat 15440746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 365
Target Start/End: Complemental strand, 14580980 - 14580718
Alignment:
Q  105 tatgaacttagtgagaaattcttaagtgttt--atgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttg---atatgtttca 199  Q
    ||||||||| || ||||||||||||||||||  ||||||||   ||||||||| ||||||||| ||| ||||||||||||| |||||   ||||  || |    
T  14580980 tatgaacttggtaagaaattcttaagtgtttttatgcgcttttgaatttgacagagtaagggcacaa-ttaaaattgcagattcttgttcatattcttta 14580882  T
Q  200 agtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaa-gatgttggaa 298  Q
    |||||||| ||  || ||||| | |||||||| | |||||||||||| |||| ||||||||||||||  ||||||| |  ||||||||| || |||| ||    
T  14580881 agtctttagctcctt-atatatgcaaggattttagagacgttggaga-gtgtcagcgcattaagagttgttgagaaact-tcaaatcaaagacgttgaaa 14580785  T
Q  299 tgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatc 365  Q
    |||||| ||||||||||||   | ||||||  ||||||| ||||| ||||  | |||||||||||||    
T  14580784 tgttgcctgatatggttaacgtcgtttgaagggacattcgaaatccattgacggaaatagaattatc 14580718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 373
Target Start/End: Original strand, 16636981 - 16637101
Alignment:
Q  253 agcgcattaagagtccttgagaagccatcaaatcaa-gatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctg 351  Q
    ||||||||||||||||||||||| | |||||||||| ||  |||||||||||| ||  |||||||||  | ||||||||||||||  ||||| |||||||    
T  16636981 agcgcattaagagtccttgagaaac-atcaaatcaaagacattggaatgttgcctggcatggttaatgtcgtttgaaaagacatttgaaatccattgctg 16637079  T
Q  352 caaatagaattatctgtttcat 373  Q
    |||||||||||||  |||||||    
T  16637080 caaatagaattattcgtttcat 16637101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 34187881 - 34187957
Alignment:
Q  297 aatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    ||||||||||||||| ||||||  | ||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  34187881 aatgttgcatgatatagttaatgtcgtttgaaaagacattcaaaattcattgctgcaattagaattatctgtttcat 34187957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 41029232 - 41029328
Alignment:
Q  269 ttgagaagccatcaaatcaagatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatc 365  Q
    ||||||| | |||||||||||| ||||||||||| | | |||||||||||  | ||||||||||||||  ||||| |||||||||||||||||||||    
T  41029232 ttgagaaactatcaaatcaagacgttggaatgttaccttatatggttaatgtcgtttgaaaagacatttcaaatccattgctgcaaatagaattatc 41029328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16534044 - 16534115
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaa 72  Q
    |||||||||||||||| | ||| ||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  16534044 taacttaatcaaataaaaaattatttgtgttttacacttgatatacaatcagaggtgtaatcaaatacaaaa 16534115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31587361 - 31587272
Alignment:
Q  1 taacttaatcaaataata---gattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt 87  Q
    |||||||||||||||| |   ||||||||| ||||||||||||||||||||||||| |||||| ||| |||||| || ||||||| ||||    
T  31587361 taacttaatcaaataaaaaaagattgtttggtttttacacttgatatacaatcagatgtgtaaacaattacaaatcagagtatgactctt 31587272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17089052 - 17088885
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattcttc-----ttagaat 95  Q
    |||||||||||||||| | ||| |||| |||| | |||||||||||||||||| |||||| ||| ||||||| | |||| || | ||      |||||||    
T  17089052 taacttaatcaaataaaatattttttggttttaa-acttgatatacaatcagatgtgtaagcaattacaaaatagagtaagactattaagactttagaat 17088954  T
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggc 165  Q
    ||| ||| |||||||||| || | |||||||||||||||||||| |||   ||||||||| |||||||||    
T  17088953 ttt-taagatatgaacttggtaataaattcttaagtgtttatgcacttttgaatttgacagagtaagggc 17088885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 21721548 - 21721357
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt-----cttagaat 95  Q
    |||||||||||||| | | ||| |||| |||| |||||||||||||||| |||||||||| ||| | ||||||| |||| || ||||      |||||||    
T  21721548 taacttaatcaaatgacaaattatttggtttt-acacttgatatacaattagaggtgtaaacaattgcaaaacagagtaagactcttaagactttagaat 21721450  T
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttg 189  Q
    ||| ||| |||||||||| || | ||||| | ||||||||||||||||   ||||||| | ||||||||| | ||| ||| ||||| |||||||    
T  21721449 ttt-taagatatgaacttggtaataaattataaagtgtttatgcgcttttgaatttgatagagtaagggcactagtaaaatttgcaaagtcttg 21721357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 20758523 - 20758587
Alignment:
Q  6 taatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaa 71  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||||| |||||| ||| ||||||    
T  20758523 taatcaaataaaaaattgtttgatttt-acacttgatatacaatcagacgtgtaaacaattacaaa 20758587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 11104996 - 11105064
Alignment:
Q  2 aacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaa 70  Q
    ||||| ||||||||| ||||||||||  |||||||||| |||||||| || |||||||||||| |||||    
T  11104996 aactttatcaaataaaagattgtttgggttttacacttaatatacaagcataggtgtaatcaaatacaa 11105064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14969102 - 14969043
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||||||||||| |||||||||| |||  |||||||||||||||||| |||||||||    
T  14969102 taacttaatcaaataaaagattgtttggtttc-acacttgatatacaatcaaaggtgtaat 14969043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 17316617 - 17316537
Alignment:
Q  196 ttcaagtctttaacttttttatataaggaaggatttgatagacgttggaga--agtgttagcgcattaagagtccttgagaa 275  Q
    |||||||||| ||||| || ||||| | |||||||||| ||||||||||||  ||||| ||||||||||||||| |||||||    
T  17316617 ttcaagtcttcaacttctt-atataggcaaggatttgagagacgttggagaagagtgtcagcgcattaagagtcgttgagaa 17316537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23486228 - 23486286
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||| ||||||||| |||||||||||  ||||||||| ||||||||| |||||||||||    
T  23486228 taactttatcaaataaaagattgtttga--tttacacttaatatacaattagaggtgtaat 23486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9558680 - 9558621
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||    
T  9558680 taactgaattaaataaaagattgtttgatttt-acacttgatatacattcaaaggtgtaat 9558621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 19965596 - 19965549
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtttatgcgctt 143  Q
    ||||||| ||||||||||||| ||||||| | ||||||||||||||||    
T  19965596 tttctaagatatgaacttagtaagaaattatgaagtgtttatgcgctt 19965549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30497611 - 30497684
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacata 76  Q
    |||||||||||||||| ||| | |||| |||  ||||||| ||||||||| ||| ||||| ||| |||||||||||    
T  30497611 taacttaatcaaataaaagaatatttggttt--acacttgttatacaatcggagatgtaaacaattacaaaacata 30497684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43283071 - 43283020
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcaga 53  Q
    |||||| ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  43283071 taacttgatcaaataaaagattgtttggtttt-acactttatatacaatcaga 43283020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 22268364 - 22268738
Alignment:
Q  1 taacttaatcaaataatagattgtttgattttt-acacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt---cttagaatt 96  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||  |||||| |||||| ||| ||||||| | ||||  | ||||   | | |||||    
T  22268364 taacttaatcaaataaaagattgtttgattttttacacttaatataagatcagatgtgtaaacaattacaaaatagagtaccactcttagacgtggaatt 22268463  T
Q  97 ttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt 196  Q
    | |||| ||||||||||| | ||||| |||||||||||||||||||  | | |||||||||||||||||||  || |||||  |||||||||| | ||||    
T  22268464 t-ctaagatatgaacttaataagaaactcttaagtgtttatgcgctatagattttgacaaagtaagggcccttgtaaaaataacagagtcttgttgtgtt 22268562  T
Q  197 t--caagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgtt 294  Q
    |  ||| | || | ||  || ||||| | |||||||||| ||| ||| |||||||   || ||||||||||||| |||||||| |||||||||| |||||    
T  22268563 tttcaaatattcagctcctt-atatatg-aaggatttgagagatgttcgagaagttccagtgcattaagagtccctgagaagctatcaaatcaa-atgtt 22268659  T
Q  295 ggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
     |||| |||||||||||| |||||  | ||||||||||||||| ||||| |||  |||||||  |||||| | ||||||    
T  22268660 tgaatcttgcatgatatgattaatgtcgtttgaaaagacattcgaaatccattattgcaaatctaattatttatttcat 22268738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 228 - 369
Target Start/End: Original strand, 13073564 - 13073705
Alignment:
Q  228 atttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaa-gatgttggaatgttgcatgatatggttaataccatttg 326  Q
    |||||| ||||||| |||| |||| ||||||||||||||| ||||||| | |||||||||| || |||||||||||   |||||||||||||  |||||     
T  13073564 atttgagagacgttagagaggtgtcagcgcattaagagtcgttgagaatc-atcaaatcaaagacgttggaatgttatctgatatggttaatgtcatttt 13073662  T
Q  327 aaaagacattcaaaatctattgctgcaaatagaattatctgtt 369  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||    
T  13073663 aaaagacattcgaaatctattgctgcaaatgaaattatttgtt 13073705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 19878393 - 19878303
Alignment:
Q  98 tctaatatatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtctt 188  Q
    ||||| ||||||||||||| | ||||||||||||||| |||||||||   ||||||||| ||||||||| ||| ||||||||||||||||||    
T  19878393 tctaagatatgaacttagtaataaattcttaagtgttctatgcgcttttgaatttgacagagtaagggcacaa-ttaaaattgcagagtctt 19878303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 27760824 - 27760747
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagta 79  Q
    |||| |||||| |||| |||||||||| |||| |||||||||||||||| |||||||||| ||  ||||||||||||||    
T  27760824 taacctaatcatataaaagattgtttggtttt-acacttgatatacaataagaggtgtaaacatttacaaaacatagta 27760747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13112832 - 13112760
Alignment:
Q  2 aacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaaca 74  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||||| |||||  ||||||| || ||||||    
T  13112832 aacttaatcaaataaaagattgtttgagatttaaacttgatatacaattagaggcataatcaaataaaaaaca 13112760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24109917 - 24109858
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    ||||||||||| |||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  24109917 taacttaatcatataaaatattgtttaatttt-acacttgatatacaatcagaggtgtaat 24109858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 42256057 - 42256149
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtctt 188  Q
    ||||||| ||||||||||||| ||||||||| ||||||| ||||||| |   ||||||||| ||||||||| | | ||||||| ||||||||||    
T  42256057 tttctaaaatatgaacttagtaagaaattctaaagtgttctatgcgcatttgaatttgacatagtaagggcac-atttaaaatagcagagtctt 42256149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26704223 - 26704282
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||||||||||| | |||||||| |||| | |||||||||||||||||| |||||||    
T  26704223 taacttaatcaaataaaatattgtttggttttaa-acttgatatacaatcagatgtgtaat 26704282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 17569634 - 17569586
Alignment:
Q  325 tgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    ||||||||||||| ||| | ||||||||||||||||||| || ||||||    
T  17569634 tgaaaagacattcgaaacccattgctgcaaatagaattacctatttcat 17569586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 21748918 - 21748890
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  21748918 ttacacttgatatacaatcagaggtgtaa 21748890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 24109720 - 24109669
Alignment:
Q  9 tcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||| || ||||||| |||| |||||||||||||||||| |||||||||    
T  24109720 tcaaataaaagtttgtttggtttt-acacttgatatacaatcaaaggtgtaat 24109669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 27766006 - 27765978
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  27766006 ttacacttgatatacaatcagaggtgtaa 27765978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 8259051 - 8259422
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt----cttagaatt 96  Q
    |||||||||||||||| |||||||||||||||| |||| ||||||| || |||||||| | ||| | ||||| | || | || ||||    |||| ||||    
T  8259051 taacttaatcaaataaaagattgtttgattttttcactagatatacgattagaggtgtgaacaaatgcaaaatagagcaagactcttaagacttaaaatt 8259150  T
Q  97 ttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt 196  Q
    | |||| | ||||||||||| ||||||| ||||||||||||| |||  ||||||||||| ||||| ||   |||||   |  | ||||||||  || |||    
T  8259151 t-ctaagaaatgaacttagtaagaaattattaagtgtttatgtgctataaaatttgacagagtaatgg---aagttgtta--gaagagtcttattaagtt 8259244  T
Q  197 --tcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgtt 294  Q
      ||||||||| | ||  |  ||||| | |||||||||| |||| || | |||||   | ||||||||||||| || |||||| |||||||||||| |||    
T  8259245 catcaagtcttcagctccta-atataggcaaggatttgagagacattagggaagtcccaacgcattaagagtctttcagaagctatcaaatcaagacgtt 8259343  T
Q  295 ggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    | |||||||  | |||||||||||  | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  8259344 gaaatgttgtctaatatggttaatgtcgtttgaaaagacattcgaaatccattgctgcaaatagaattatttgtttcat 8259422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5075810 - 5075752
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    |||||| ||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||    
T  5075810 taacttgatcaaataaaagattgtttga-ttttacacctgaaatacaatcagaggtgtaa 5075752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 28980893 - 28980967
Alignment:
Q  4 cttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagta 79  Q
    ||||||||||||| |||| ||||| |||| |||||| |||||||| |||| |||||| ||| ||||||||||||||    
T  28980893 cttaatcaaataagagatggtttggtttt-acacttaatatacaaccagatgtgtaaacaattacaaaacatagta 28980967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 4031584 - 4031519
Alignment:
Q  308 atatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |||||||||||  | |||||| |||||||| ||||| ||||||||||||| |||||| ||||||||    
T  4031584 atatggttaatgtcttttgaagagacattcgaaatccattgctgcaaataaaattatttgtttcat 4031519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 10647112 - 10647064
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtt-tatgcgctt 143  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  10647112 tttctaagatatgaacttagtaagaaattcttaagtgttctatgcgctt 10647064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23800014 - 23800065
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcaga 53  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||||||||||    
T  23800014 taacttaatcaaataaaagattgtttg-gttttacatttgatatacaatcaga 23800065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 12733444 - 12733479
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagt 131  Q
    ||||||||||||||||||||| ||||||||||||||    
T  12733444 tttctaatatatgaacttagtaagaaattcttaagt 12733479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 8309745 - 8309715
Alignment:
Q  30 ttttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||||    
T  8309745 ttttacacttgatatacaatcagaggtgtaa 8309715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 17891573 - 17891508
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggaga--agtgttagcgcattaagagtccttgagaagc 277  Q
    ||||||||| |||||||||| ||||||||||||  ||||| | |||||||||||||  ||||||||    
T  17891573 ttatataagcaaggatttgagagacgttggagaagagtgtcaacgcattaagagtcactgagaagc 17891508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 7561309 - 7561225
Alignment:
Q  104 atatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtctt 188  Q
    ||||||||||||| ||||||||||||||||| |||| ||||   ||||||||| ||||| ||| | | ||||||||| ||||||||    
T  7561309 atatgaacttagtaagaaattcttaagtgttctatgtgcttttgaatttgacatagtaatggcac-atttaaaattgaagagtctt 7561225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 24865386 - 24865451
Alignment:
Q  308 atatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |||||||||||  | |||||| |||||||||||||| |||| |||||||| || ||| ||||||||    
T  24865386 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatttgtttcat 24865451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 26454172 - 26454143
Alignment:
Q  31 tttacacttgatatacaatcagaggtgtaa 60  Q
    ||||||||||||||||||||||||||||||    
T  26454172 tttacacttgatatacaatcagaggtgtaa 26454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 4031863 - 4031823
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaatcaactacaaaa 72  Q
    |||||||||||||||||| |||||||||| ||| |||||||    
T  4031863 ttacacttgatatacaattagaggtgtaaacaattacaaaa 4031823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 10647177 - 10647149
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  10647177 ttacacttgatatacaatcagaggtgtaa 10647149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 19141957 - 19141985
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  19141957 ttacacttgatatacaatcagaggtgtaa 19141985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 20741356 - 20741384
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  20741356 ttacacttgatatacaatcagaggtgtaa 20741384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 214 - 370
Target Start/End: Complemental strand, 6561212 - 6561056
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgttgcatgatatgg 313  Q
    ||||||| | || |||| || |||| |||||||| ||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||    
T  6561212 ttatataggaaatgattcgagagacattggagaaatgttagcgcattaagagtctttgagaagctaccaaatcaagacgttggaatgttgcatgatatgg 6561113  T
Q  314 ttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgttt 370  Q
    |||||  | ||||||||||||||  ||||  | || |||||||| ||||||| ||||    
T  6561112 ttaatgtcgtttgaaaagacattttaaattcaatgatgcaaatataattatccgttt 6561056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6561408 - 6561275
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattctt----cttagaatt 96  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||  || ||||||||| |||| || ||||    ||||||| |    
T  6561408 taacttaatcaaataaaagattgtttgatttt-acacttgatatacaatcagaagtgtaaataaatacaaaacagagtaagactcttaagacttagaa-t 6561311  T
Q  97 ttctaatatatgaacttagtgagaaattcttaagtg 132  Q
    |||||| |||| |||||||  |||||||||||||||    
T  6561310 ttctaacatataaacttagcaagaaattcttaagtg 6561275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 11130807 - 11130895
Alignment:
Q  277 ccatcaaatcaa-gatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattat 364  Q
    |||||||||||| || ||||||||||||||||||||  |||||  | |||| ||||||||||||||||||||| |||||||||||||||    
T  11130807 ccatcaaatcaaagacgttggaatgttgcatgatatctttaatgtcgtttggaaagacattcaaaatctattgatgcaaatagaattat 11130895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 15586262 - 15586339
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagta 79  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||| ||| ||||||||| ||||    
T  15586262 taacttaatcaaataaaaggttgtttgatttt-acacttgatatacaatcaaaggtgtaaacaaatacaaaacagagta 15586339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 373
Target Start/End: Original strand, 17291330 - 17291610
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtt-tatgcgcttcaaaatttgacaa-agtaagggcccaagttaaaattgcagagtcttgatat 193  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||   |||||||||| ||||| | |  | ||||||  |||||||||||| |||    
T  17291330 tttctaagatatgaacttagtaagaaattcttaagtgttctatgcgcttttgaatttgacaagagtaatgacata-gttaaacgtgcagagtcttgttat 17291428  T
Q  194 gttt---caagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaa-g 289  Q
      ||   |||||||| ||||  || ||||| | ||| |||||| |||||||||||| ||   |  |||||||||||| ||||||||| |||||||||| |    
T  17291429 cattattcaagtcttcaactcctt-atataggaaagaatttgagagacgttggagaggttccaatgcattaagagtcgttgagaagc-atcaaatcaaag 17291526  T
Q  290 atgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    |  |||||||||||| ||||||| |||||    |||||||| |||||  ||||  | | |||||||||||| ||||||||||||    
T  17291527 acattggaatgttgcctgatatgattaattttgtttgaaaatacatttgaaattcaattctgcaaatagaaatatctgtttcat 17291610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30701819 - 30701759
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    ||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  30701819 taacttaattagataaaagactgtttgatttttacacttgatatacaatcagaggtttaat 30701759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 318
Target Start/End: Original strand, 29031694 - 29031983
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattct----tcttagaattttctaatatatgaacttagtgagaaattctt 127  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |  |   || |      |||||| ||||||| ||||||||||||| |||||||  |    
T  29031694 ttacacttgatatacaatcagaggtgtaaacaattacaaaacaaaacaaacttttaagactttagaa-tttctaagatatgaacttagtaagaaatttgt 29031792  T
Q  128 aagtgtt-tatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtc---ttgatatgtttcaagtctttaacttttttatataagg 223  Q
    |||| || |||||||||  |||||||| | |||||||| |  ||||||||||||||||||   ||||||| | | |||||||   | |  ||||||| |     
T  29031793 aagtcttctatgcgcttttaaatttgagagagtaaggg-catagttaaaattgcagagtcatattgatat-tcttaagtcttcggc-tccttatatagga 29031889  T
Q  224 aaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatc-aagatgttggaatgttgcatgatatggttaat 318  Q
    |||||||||| ||| ||||||| ||| | ||||||||||||||| || ||||| | ||||||| ||||  ||| ||||||||||||||||||||||    
T  29031890 aaggatttgagagatgttggag-agtatcagcgcattaagagtcgttcagaag-cttcaaatcaaagacattgaaatgttgcatgatatggttaat 29031983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21946581 - 21946535
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatataca 47  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||    
T  21946581 taacttaatcaaataaaagattgtttgagttttacacttaatataca 21946535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 362
Target Start/End: Complemental strand, 17338402 - 17338135
Alignment:
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgtttatgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgt 195  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    || |||||||  |||||||| || ||||| |||||||||||||  | |||    
T  17338402 tttctaagatatgaacttagtaagaaattcttaagtgtttatgcgccatgaattttgacagggtaagggcacatgttaatattgcagagtcttattgtgt 17338303  T
Q  196 t--tcaagtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgt 293  Q
    |  ||||||||| ||||   | | ||| | ||| || | | ||| | ||||||||||  || || ||||||||| || ||||||  |||||||||||| |    
T  17338302 tcttcaagtcttcaactccat-acatacgcaagtatattagagatgctggagaagtggcagtgcgttaagagtcttttagaagcattcaaatcaagatat 17338204  T
Q  294 tggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaatt 362  Q
    ||||||||| | ||||||  |||||  | |||||||||||||| ||||| ||||| |||||||||||||    
T  17338203 tggaatgtttcctgatattattaatgtcgtttgaaaagacatttaaaatttattgttgcaaatagaatt 17338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 363
Target Start/End: Complemental strand, 19642221 - 19642072
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgttgcatgatatgg 313  Q
    ||||||||| ||| |||| | ||||||| ||||||||| ||||||||||||||  || |||||| |||||||||||| |||| |||||| | ||||||||    
T  19642221 ttatataagcaagaattttagagacgttagagaagtgtcagcgcattaagagttattcagaagctatcaaatcaagacgttgaaatgtttcctgatatgg 19642122  T
Q  314 ttaataccatttgaaaagacattcaaaatctattgctgcaaatagaatta 363  Q
    ||| |  | ||||||||||||||  ||||| |||| ||||||| ||||||    
T  19642121 ttattgtcgtttgaaaagacatttgaaatccattgttgcaaattgaatta 19642072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 365
Target Start/End: Original strand, 31730435 - 31730586
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatca-agatgttggaatgttgcatgatatg 312  Q
    ||||||| | || ||||||| |||||||||||| |||| ||||||||||||||| |||||||| | |  ||||| ||| |||||||||||||||||||||    
T  31730435 ttatataggcaaagatttgagagacgttggagaggtgtcagcgcattaagagtcgttgagaag-cttttaatcatagaggttggaatgttgcatgatatg 31730533  T
Q  313 gttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatc 365  Q
    ||||||  | || | | |||||||  ||||| |||||||||| ||||||||||    
T  31730534 gttaatgtcgttggtagagacatttgaaatccattgctgcaagtagaattatc 31730586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 369
Target Start/End: Original strand, 20690016 - 20690142
Alignment:
Q  243 gagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaat 342  Q
    |||| |||| ||| ||||||||||| |||||||||  ||||||||| ||||||||||||||  |||||||||||||  | ||||||||||||||  |||     
T  20690016 gagaggtgtcagcacattaagagtctttgagaagctttcaaatcaaaatgttggaatgttgtctgatatggttaatgtcgtttgaaaagacatttgaaaa 20690115  T
Q  343 ctattgctgcaaatagaattatctgtt 369  Q
    | ||| |||||| ||||||||| ||||    
T  20690116 ccatttctgcaattagaattatttgtt 20690142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22185632 - 22185692
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  22185632 taacttaatcaaataaaagattgttagatttttacacttgatatacaatcagaggtataat 22185692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 373
Target Start/End: Complemental strand, 25936434 - 25936276
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatc-aagatgttggaatgttgcatgatatg 312  Q
    ||||||| | |||||||||| |||||||||||| |||  | |||||||||||||||||||||| ||||||||| |||| ||| |||| ||| ||||||||    
T  25936434 ttatataggcaaggatttgagagacgttggagaggtgccaacgcattaagagtccttgagaag-catcaaatcaaagacgttagaat-ttgtatgatatg 25936337  T
Q  313 gttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 373  Q
    ||||||    || ||||| |||||  ||||| |||||||| |||||||||||  |||||||    
T  25936336 gttaatgttgttagaaaaaacatttgaaatccattgctgccaatagaattattcgtttcat 25936276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19642441 - 19642371
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaa 72  Q
    |||||||||||||||| ||||| ||||||||| ||||||||| |||||||| |||||||||||| |||||||    
T  19642441 taacttaatcaaataaaagattatttgatttt-acacttgatttacaatcaaaggtgtaatcaattacaaaa 19642371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 20689783 - 20689841
Alignment:
Q  2 aacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  20689783 aacttaatcaaataaaagattgtttgatttt-acacttgatatacaatcataggtgtaat 20689841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 12860242 - 12860056
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcaga-ggtgtaatcaactacaaaacatagtatgattcttc----ttagaat 95  Q
    |||||||||||||||| ||| ||||||||||| | |||||||||| ||||| | || ||||  || |||||||||||||| || ||||     |||||||    
T  12860242 taacttaatcaaataaaagactgtttgatttt-atacttgatataaaatcacatggggtaaataattacaaaacatagta-gactcttaataattagaat 12860145  T
Q  96 tttctaatatatgaacttagtgagaaattcttaagtgttt-atgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagt 185  Q
    ||  ||| ||||||||||||| |||||||||||||||||| ||||||||   ||||||||| ||||||||  ||| ||||||| |||||||    
T  12860144 tta-taagatatgaacttagtaagaaattcttaagtgtttaatgcgcttttgaatttgacagagtaagggtacaa-ttaaaatagcagagt 12860056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 18325847 - 18325806
Alignment:
Q  23 gtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  18325847 gtttgagttttacacttgatatacaatcagaggtgtaatcaa 18325806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 19692420 - 19692529
Alignment:
Q  260 taagagtccttgagaagccatcaaatcaagatgttggaatgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaataga 359  Q
    |||||| | ||||||||| ||| |||||||| |||| |||||||  |||||||||||||  ||||||||| | ||||| |||   ||||||||||||| |    
T  19692420 taagagcctttgagaagctatcgaatcaagacgttgaaatgttgtctgatatggttaatgtcatttgaaaggtcattccaaaaacattgctgcaaataaa 19692519  T
Q  360 attatctgtt 369  Q
    ||||| ||||    
T  19692520 attatttgtt 19692529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19903215 - 19903278
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||||||||||||| ||||| ||||  ||||| ||||||||||| |||||||| ||||||||    
T  19903215 taacttaatcaaataaaagattatttgggttttatacttgatatacgatcagaggagtaatcaa 19903278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 25936616 - 25936573
Alignment:
Q  29 tttttacacttgatatacaatcagaggtgtaatcaactacaaaa 72  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  25936616 tttttacacttgatatacaatcagaggtgtaagcaattacaaaa 25936573  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31218224 - 31218294
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaa 72  Q
    |||| ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||||| ||| |||||||    
T  31218224 taacataatcaaataaaagattctttggtttt-acacttgatatacaatcaaaggtgtaaacaaatacaaaa 31218294  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36740767 - 36740708
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    ||||||| |||||||| ||||||||||  |||||||||||||||||||||| | ||||||    
T  36740767 taacttagtcaaataaaagattgtttgggttttacacttgatatacaatcaaaagtgtaa 36740708  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 6037692 - 6037749
Alignment:
Q  3 acttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||||||||| ||| | ||||||||| |||||||||||| ||||| |||||||||    
T  6037692 acttaatcaaataaaagactatttgatttt-acacttgatatagaatcaaaggtgtaat 6037749  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 22820979 - 22821007
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  22820979 ttacacttgatatacaatcagaggtgtaa 22821007  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 26013611 - 26013685
Alignment:
Q  217 tataaggaaggatttgatagacgttggagaa--gtgttagcgcattaagagtccttgagaagccatcaaatcaaga 290  Q
    |||||| |||||||||| |||||||||||||   ||| |||| |||||||||| |||||||| | |||||||||||    
T  26013611 tataagcaaggatttgaaagacgttggagaaatatgtcagcgtattaagagtcattgagaag-cttcaaatcaaga 26013685  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 336
Target Start/End: Original strand, 20245262 - 20245383
Alignment:
Q  214 ttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaagatgttggaatgttgcatgatatgg 313  Q
    |||||||| ||||||||| | ||||||||||||| ||  |  |||||||||||||||||||||| |||||||||||| ||| ||||||||  || |||||    
T  20245262 ttatataaagaaggattttagagacgttggagaa-tgccaatgcattaagagtccttgagaagctatcaaatcaagacgttagaatgttgtctggtatgg 20245360  T
Q  314 ttaataccatttgaaaagacatt 336  Q
    ||||| |||||| ||||||||||    
T  20245361 ttaatgccattttaaaagacatt 20245383  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12235893 - 12235952
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||| ||||||| ||   ||||||||||||||||||||||||||||||    
T  12235893 taacttaatcaaataaaagattgtatgtaatttacacttgatatacaatcagaggtgtaa 12235952  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15522008 - 15521945
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||||||||||||| ||||||||| | ||||||||||||| || |||||||||| |||||||    
T  15522008 taacttaatcaaataaaagattgtttaagttttacacttgatttataatcagaggtttaatcaa 15521945  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46342581 - 46342641
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    ||||||||||||||||  |||||||   ||||||||||||||||||||||||| |||||||    
T  46342581 taacttaatcaaataaaggattgttgattttttacacttgatatacaatcagatgtgtaat 46342641  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20243620 - 20243678
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||| ||| ||||||    
T  20243620 taacttaatcaaataaaagattgtttg-gttttacacttgatatacaattagatgtgtaa 20243678  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 12190801 - 12190874
Alignment:
Q  4 cttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagta 79  Q
    ||||||||||||| ||||||||  | |||||||||| ||||||||||| |||||||| ||| ||||||||| ||||    
T  12190801 cttaatcaaataa-agattgttc-agttttacactttatatacaatcaaaggtgtaaacaattacaaaacaaagta 12190874  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13977738 - 13977679
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||| | ||||||||  |||||| |||||||| |||||||| ||||||    
T  13977738 taacttaatcaaataaaaaattgtttgggttttacgcttgatatgcaatcagaagtgtaa 13977679  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 14116432 - 14116466
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaatcaact 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  14116432 ttacacttgatatacaatcagaggtgtaataaact 14116466  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 18445832 - 18445885
Alignment:
Q  226 ggatttgatagacgttggagaa--gtgttagcgcattaagagtccttgagaagc 277  Q
    |||||||| |||||||||||||  |||| ||||||||||||||| |||||||||    
T  18445832 ggatttgagagacgttggagaatagtgtaagcgcattaagagtcgttgagaagc 18445885  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 26621218 - 26621190
Alignment:
Q  32 ttacacttgatatacaatcagaggtgtaa 60  Q
    |||||||||||||||||||||||||||||    
T  26621218 ttacacttgatatacaatcagaggtgtaa 26621190  T

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Target: scaffold0804 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 365
Target Start/End: Complemental strand, 697 - 435
Alignment:
Q  105 tatgaacttagtgagaaattcttaagtgttt--atgcgcttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttg---atatgtttca 199  Q
    ||||||||| || ||||||||||||||||||  ||||||||   ||||||||| ||||||||| ||| ||||||||||||| |||||   ||||  || |    
T  697 tatgaacttggtaagaaattcttaagtgtttttatgcgcttttgaatttgacagagtaagggcacaa-ttaaaattgcagattcttgttcatattcttta 599  T
Q  200 agtctttaacttttttatataaggaaggatttgatagacgttggagaagtgttagcgcattaagagtccttgagaagccatcaaatcaa-gatgttggaa 298  Q
    |||||||| ||  || ||||| | |||||||| | |||||||||||| |||| ||||||||||||||  ||||||| |  ||||||||| || |||| ||    
T  598 agtctttagctcctt-atatatgcaaggattttagagacgttggaga-gtgtcagcgcattaagagttgttgagaaact-tcaaatcaaagacgttgaaa 502  T
Q  299 tgttgcatgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatc 365  Q
    |||||| ||||||||||||   | ||||||  ||||||| ||||| ||||  | |||||||||||||    
T  501 tgttgcctgatatggttaacgtcgtttgaagggacattcgaaatccattgacggaaatagaattatc 435  T

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Target: scaffold0040 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8254 - 8185
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaactacaa 70  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||| |||||    
T  8254 taacctaatcaaataaaagattgtttggcttttacacttgatatacaataagaggtgtaaacaaatacaa 8185  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 135753 - 135812
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaat 61  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||    
T  135753 taacttaatcaaataaaagattattt-agttttacacttgatatacaatcagaggtgtaat 135812  T

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Target: scaffold1190 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 920 - 982
Alignment:
Q  1 taacttaatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    |||||||||||||||| |||| |||||| ||||||| |||||||||| ||||||||||||||||    
T  920 taacttaatcaaataa-agatcgtttgagttttacatttgatatacattcagaggtgtaatcaa 982  T

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Target: scaffold0514 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 6897 - 6954
Alignment:
Q  6 taatcaaataatagattgtttgatttttacacttgatatacaatcagaggtgtaatcaa 64  Q
    ||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||    
T  6897 taatcaaataa-agatcgtttgagttttacatttgatatacaatcagaggtgtaatcaa 6954  T

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Target: scaffold0329 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 4018 - 4132
Alignment:
Q  30 ttttacacttgatatacaatcagaggtgtaatcaactacaaaacatagtatgattcttc-----ttagaattttctaatatatgaacttagtgagaaatt 124  Q
    ||||| ||||||||||||||||||||||||| ||| ||| ||| | |||| || |||       ||||||||| |||| |||||||||| || |||||||    
T  4018 ttttatacttgatatacaatcagaggtgtaaacaagtaccaaatagagtaagactctaaagactttagaattt-ctaagatatgaacttggtaagaaatt 4116  T
Q  125 cttaagtgtttatgcg 140  Q
    ||||||||||||||||    
T  4117 cttaagtgtttatgcg 4132  T

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