View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_16 (Length: 367)
Name: NF18124_low_16
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 25262078 - 25262240
Alignment:
| Q |
53 |
tatttcagtctcaacttattcccatagctacaacacaatcaaccaaactcaatagtgttgataagttgcttactcctacctttccctttatcaataaatc |
152 |
Q |
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| T |
25262078 |
tatttcagtctcaacttattcccatagctacaacacaatcaaccaaactcaatagtgttgataagttgtttactcctacctttccctttatcaataaatc |
25262177 |
T |
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| Q |
153 |
attatttattcaagataataagagtcagcaaaaaagaaatggtaacaattcttataacagtgt |
215 |
Q |
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| T |
25262178 |
attatttattcaagataataagagtcagcaaaaaagaaatggtaacaattcttataacagtgt |
25262240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 25274650 - 25274796
Alignment:
| Q |
211 |
agtgtcaacaatttcaaatggtgcgaacaaggacaacaatatattcatatatggaaattatcataatatttattagttgctcttatgcacatatctattt |
310 |
Q |
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| T |
25274650 |
agtgtcaaca-tttcaaatggtgcaaacaaggacaacaatatattcatatatggaaattatcataatatttattagttgctcttatgcacatatctattt |
25274748 |
T |
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| Q |
311 |
atgaaaatgttataaaaagggaaaaatcc--ttgggtctgaaatctct |
356 |
Q |
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| T |
25274749 |
atgaaaatgttataaaaagggaaaaatcctattgggtctgaaatctct |
25274796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 321
Target Start/End: Complemental strand, 25277450 - 25277201
Alignment:
| Q |
69 |
tattcccatagctacaacacaatcaaccaaactcaatagtgttgataagttgcttactcctacctttccctttatcaataaatcattatttattcaagat |
168 |
Q |
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| T |
25277450 |
tatttccatggctacaacacaaccaaccaaactcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagccattgtatattcgagat |
25277351 |
T |
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| Q |
169 |
aataagagtcagcaaaaaagaaatggtaacaattcttataacagtgtcaacaatttcaaatggtgcgaacaaggacaacaatatattcatatatggaaat |
268 |
Q |
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| T |
25277350 |
aataaaagtcggaaaaaaagaaatggtaacacttcttctagcagggttaac-atttcatatggtgtgaacaatgacaataatatgttcctaaatggaaac |
25277252 |
T |
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| Q |
269 |
tatcataatatttattagttgctcttatgcacatatctatttatgaaaatgtt |
321 |
Q |
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| T |
25277251 |
tatc--aatattgtgcagctgctcctatgcaaatatctgtttatgaaaatgtt |
25277201 |
T |
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