View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_low_17 (Length: 354)
Name: NF18124_low_17
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 39336405 - 39336187
Alignment:
| Q |
11 |
catagggagtcgatacaaactaaaatagagtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39336405 |
catagggagtcgatacaaactaaaatagagtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgacac |
39336306 |
T |
|
| Q |
111 |
--tcaaatccacgctggcatcaatacgtctaccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagagaaacataatga |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39336305 |
actcaaatccacgctggcatcaatatgtctaccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagagaaacataatga |
39336206 |
T |
|
| Q |
209 |
agtttaccaaatctaccat |
227 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39336205 |
agtttaccaaatctaccat |
39336187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 39336175 - 39336104
Alignment:
| Q |
269 |
gagaaattgattgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39336175 |
gagaaattgattgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaa |
39336104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 272
Target Start/End: Complemental strand, 791004 - 790778
Alignment:
| Q |
40 |
gtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatcaatacgtcta |
139 |
Q |
| |
|
|||||||||||||||| |||||||||| || || |||| ||||||||| | ||||||||| ||||| |||||||| || || | ||||||| || || |
|
|
| T |
791004 |
gtagaaacataccaattcagcaagatcagcaccgctaaggttttcacatgcatccattcttccaatggcgctcaaatctacactagaatcaatatgttta |
790905 |
T |
|
| Q |
140 |
ccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagagaaacataatgaagtttaccaaatctaccatgtcgtaagagag |
239 |
Q |
| |
|
| ||||||||| ||||||||| ||||||| || || ||||| || |||| |||||| | ||||||||||| || ||| | |||||||||| |
|
|
| T |
790904 |
ttccttgcaagagctttcaatatcaaaacacgg------tcatctgggctcgggagaggaacatagagcagtttaccaaacctcccaggccgtaagagag |
790811 |
T |
|
| Q |
240 |
cagggtccatcgcctcaggcctgcaaaacgaga |
272 |
Q |
| |
|
| ||||||||| | ||||||||| |||| |||| |
|
|
| T |
790810 |
cggggtccatcacatcaggcctgtaaaatgaga |
790778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 7295429 - 7295508
Alignment:
| Q |
50 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatc |
129 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||| |||| ||| ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
7295429 |
accaatgcagcaagatcagcaccattaaagtttttacaagctttcattcttgcaatgtcgctcaaatccacactggcatc |
7295508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 7304835 - 7304972
Alignment:
| Q |
180 |
cgtccgggcttggaagagaaacataatgaagtttaccaaatctaccatgtcgtaagagagcagggtccatcgcctcaggcctgcaaaacgagaaattgat |
279 |
Q |
| |
|
|||| |||||||||||||||| |||| | | |||||||||||||| | |||| || ||| ||||||| || ||||||| |||| ||| |||||| |
|
|
| T |
7304835 |
cgtctgggcttggaagagaaatataaatatgattaccaaatctacccggacgtaggacagctttgtccatctccaaaggcctgtaaaatgaggaattgag |
7304934 |
T |
|
| Q |
280 |
tgaatgcacaacatgatatgaagtaaaataactaagcagg |
319 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||| |||| |
|
|
| T |
7304935 |
tgaat--acaatatgatgtgaagtaaaataactaatcagg |
7304972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 7304663 - 7304746
Alignment:
| Q |
50 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatcaata |
133 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||||| ||| | |||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
7304663 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcgatcttccaatggcgctcaaatccacactggcatcaata |
7304746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 7295606 - 7295710
Alignment:
| Q |
179 |
tcgtccgggcttggaagagaaacataatgaagtttaccaaatctaccatgtcgtaagagagcagggtccatcgcctcaggcctgcaaaacgagaaattga |
278 |
Q |
| |
|
||||| ||||||||||||| | || | ||| |||||||||||||| | | || ||||||| ||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
7295606 |
tcgtctgggcttggaagagggatatgaataagattaccaaatctacccagccttaggagagcactgtccatcacctcaggcctggaaaacgaaaaattga |
7295705 |
T |
|
| Q |
279 |
ttgaa |
283 |
Q |
| |
|
|||| |
|
|
| T |
7295706 |
gtgaa |
7295710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University