View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_low_19 (Length: 348)
Name: NF18124_low_19
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 329
Target Start/End: Complemental strand, 30726510 - 30726204
Alignment:
| Q |
21 |
ctgcttttattgttttccgaattagctcctcaactcaattttttattatccatttatcaattttgtaaattggttattgcatttaacattgaaaaaactc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30726510 |
ctgcttttattgttttccgaattagctcctcaactcaattttttattttgtatttatcaattttgtaaattggttattgcatttaacattgaaaaaactc |
30726411 |
T |
|
| Q |
121 |
ctctnnnnnnncattgagaaaattttgtaggtcgaacttatcaattttctaaattgtctttaaaacttatctaccatagtttcaaacttttcttttataa |
220 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30726410 |
cactaaaaaaacattgagaaaattttgtaggtcgaacttatcaattttctaaattgtctttaaaacttatctaccatagtttcaaacttttcttttataa |
30726311 |
T |
|
| Q |
221 |
gcaagatatattgaacaaaagagaataacccgccatgaatcaaactaacaacctttggnnnnnnnngtatccaaattatcagcttcaaaggttgaatagc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
30726310 |
gcaagatatattgaacaaaagagaataacc--ccatgaatcaaactaacaacctttggaaaaaaaagtatccaaattatgagcttcaaaggttgaatagc |
30726213 |
T |
|
| Q |
321 |
aaaaatggg |
329 |
Q |
| |
|
||||||||| |
|
|
| T |
30726212 |
aaaaatggg |
30726204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University