View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_low_2 (Length: 606)
Name: NF18124_low_2
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 42212426 - 42211862
Alignment:
| Q |
18 |
cttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42212426 |
cttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggatgtttgcaaa |
42212335 |
T |
|
| Q |
118 |
agtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212334 |
agtgtctgctgtgttttagggcaggttctgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatc |
42212235 |
T |
|
| Q |
218 |
aataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
42212234 |
aataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcattagttca |
42212135 |
T |
|
| Q |
318 |
agagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42212134 |
agagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgca |
42212035 |
T |
|
| Q |
418 |
gtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattcttagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212034 |
gtctttcagtttcctaagaagggatgagacggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaattcttagt |
42211943 |
T |
|
| Q |
518 |
cctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42211942 |
cctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
42211862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 42203558 - 42202994
Alignment:
| Q |
18 |
cttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
42203558 |
cttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggatgtatgcaaa |
42203467 |
T |
|
| Q |
118 |
agtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42203466 |
agtgtctgctgtgttttagggcaggttctgtgaccagcatcaagccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatc |
42203367 |
T |
|
| Q |
218 |
aataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
42203366 |
aataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcattagttca |
42203267 |
T |
|
| Q |
318 |
agagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42203266 |
agagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgca |
42203167 |
T |
|
| Q |
418 |
gtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattcttagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203166 |
gtctttcagtttcctaagaagggatgagacggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaattcttagt |
42203075 |
T |
|
| Q |
518 |
cctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203074 |
cctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
42202994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 42420821 - 42421306
Alignment:
| Q |
18 |
cttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
42420821 |
cttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggttgtttgcaaa |
42420912 |
T |
|
| Q |
118 |
agtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42420913 |
agtgtctgctgtgttttagggcaggttctgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatc |
42421012 |
T |
|
| Q |
218 |
aataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttca |
317 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||| ||| ||| ||||||||||||||| |
|
|
| T |
42421013 |
aataatcatagctgacatcatcagaacattgtttcgcacaaaaaggattgtcgataatacctgaccggttgagacgattacagggtctttcattagttca |
42421112 |
T |
|
| Q |
318 |
agagatataggacatcgaaaatc----------------gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggat |
401 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||||| ||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
42421113 |
agagatataggacaccgaaaatcatctgggattacaggagaccggtgcttaattggaac-attctcact--------gtcataggtatcaacctcaggat |
42421203 |
T |
|
| Q |
402 |
tttctgtgagcacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaat |
501 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||| | ||||||||||| |
|
|
| T |
42421204 |
tttctgcgagcacgcagtctttcagtttcctaagaagagatgagacggtttcaaaactg--------tctcctagttctccgttgcttgttatgaccaat |
42421295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 101 - 512
Target Start/End: Complemental strand, 42218332 - 42217915
Alignment:
| Q |
101 |
taagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaat |
200 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42218332 |
taagggatgtatgcaaaagtgtctactgtattttagggcaggttatgtgaccagcatcaagtcatttttgaatgcaggatctttcatatgtctgcaaaat |
42218233 |
T |
|
| Q |
201 |
aaagtaggaatttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| || |
|
|
| T |
42218232 |
aaagtaggaatttcatcaataatcataaccgacaccatcagaacaatgtttcacacaaaaaggattgtggataatacctgaccggttgagacaattacag |
42218133 |
T |
|
| Q |
301 |
gatctttcattagttcaagagatataggacatcgaaaatc----------------gactggtgcttaattgaaactattctcgctctcatagagtcata |
384 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||| || |||| |
|
|
| T |
42218132 |
gatcttcccttaattcaagagatataggacatcgaaaatcctctgggattacacgagaccagtgcttaattgaaac-attcgcgccct--------cata |
42218042 |
T |
|
| Q |
385 |
ggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgt |
484 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| || || ||| |||||||||||| |
|
|
| T |
42218041 |
ggtatcaaccttaggattttctgcgagcatgcagtttttcagtttcctaagaagggatgagatggtttcaactttcaaaact-gtctcctagttctccgt |
42217943 |
T |
|
| Q |
485 |
tgcctattatgaccaattcgtgtaattc |
512 |
Q |
| |
|
| | | |||||||||||||||||||||| |
|
|
| T |
42217942 |
tactttttatgaccaattcgtgtaattc |
42217915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 42409006 - 42409172
Alignment:
| Q |
23 |
ttctttggtagttcaacaccattgctat-cacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaaagtg |
121 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||||||||| ||| | | ||||| |
|
|
| T |
42409006 |
ttctttgttagttaaacaccattgctgttcacaccataaaccaatcagactcttcaaaacatggttag--------gagtaagggctgtat-ccaaagta |
42409096 |
T |
|
| Q |
122 |
tctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaa |
197 |
Q |
| |
|
||||||||||||| | ||| ||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
42409097 |
tctgctgtgttttcgcgcaagttctgtgaccagcatcaaataatttttgaatgcaagatctttcatatgtccgcaa |
42409172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 533 - 598
Target Start/End: Original strand, 42421338 - 42421403
Alignment:
| Q |
533 |
ctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
598 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
42421338 |
ctcagatgcaacttctcagagagtcttttgagtatagcaggatcagggtctttatctttctgtgct |
42421403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 42217878 - 42217818
Alignment:
| Q |
538 |
atgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
598 |
Q |
| |
|
|||||||||||||| | | |||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
42217878 |
atgcaacttctcagtgggtcttttgaggatagcaggatcagggtctttatctttctgtgct |
42217818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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