View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_21 (Length: 342)
Name: NF18124_low_21
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 44 - 326
Target Start/End: Original strand, 17857699 - 17857980
Alignment:
| Q |
44 |
tgcagcattatcctgtggtctttttggctatgtcttagtgcaatttctaaacttttcaagcctaacacttcctttggttgaatagatattaagaacccaa |
143 |
Q |
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| T |
17857699 |
tgcagcattaccctgtgatctttttggttatgtcttagtgcaatttctaaacttttcaagcctgacacttcctttggttgaatagatattaagaacccaa |
17857798 |
T |
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| Q |
144 |
caaagagaagaagcattattctagaaggatggaacaccattttcactaattcactcttaaacaagaacagaaatagaagggtatattgtttctgttttct |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
17857799 |
caaagagaagaagcattattctagaaggatggaacaccattttcactaattcactcttaaacaagaacaaaaatagaa-ggtatattgtttctgttttct |
17857897 |
T |
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| Q |
244 |
tatggtccattcctgtagatataagcttgttatatatgccccactagatttggagggaggctttaaagctttaaagcaaagag |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17857898 |
tatggtccattcctgtagatataagcttgttatatatgccccactagatttggagggagactttaaagctttaaagcaaagag |
17857980 |
T |
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