View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_low_22 (Length: 336)

Name: NF18124_low_22
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_low_22
NF18124_low_22
[»] chr2 (4 HSPs)
chr2 (1-174)||(4239126-4239290)
chr2 (260-323)||(4239354-4239417)
chr2 (170-222)||(4239306-4239358)
chr2 (36-73)||(20970637-20970674)
[»] chr6 (4 HSPs)
chr6 (1-91)||(15501338-15501428)
chr6 (30-70)||(34312077-34312117)
chr6 (30-70)||(4502531-4502571)
chr6 (30-70)||(15826083-15826123)
[»] chr1 (1 HSPs)
chr1 (20-93)||(46655258-46655331)
[»] scaffold1049 (1 HSPs)
scaffold1049 (30-70)||(197-237)
[»] chr8 (1 HSPs)
chr8 (33-73)||(28392565-28392605)
[»] chr7 (2 HSPs)
chr7 (30-70)||(26083081-26083121)
chr7 (30-70)||(26106868-26106908)
[»] chr5 (2 HSPs)
chr5 (30-70)||(548670-548710)
chr5 (30-70)||(30279082-30279122)
[»] chr4 (1 HSPs)
chr4 (21-93)||(8165286-8165358)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4239126 - 4239290
Alignment:
Q  1 gaattagtcctgcctgcactttgtcgctaacaacatgacaatcaatttctatgtgctttgttctctcatggaatacagggttagcaactatatatgtagt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239126 gaattagtcctgcctgcactttgtctctaacaacatgacaatcaatttctatgtgctttgttctctcatggaatacagggttagcaactatatatgtagt 4239225  T
Q  101 gcaaatttattatacagtataagataatgggtgttatgtgagttatgagaaaatcttgcaataggtagagtagc 174  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  4239226 gcaaatttattatacagtataagataatgggt---------gttatgagaaaatcttgcaataggtagagtagc 4239290  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 4239354 - 4239417
Alignment:
Q  260 taccatggaagaaacagaagccaatggtggatcttctagtgtcttggaatgctccccaatctga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4239354 taccatggaagaaacagaagccaatggtggatcttctagtgtcttggcatgctccccaatctga 4239417  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 4239306 - 4239358
Alignment:
Q  170 gtagcttgtacaagtgcttttgtattcagcttttgatgaagatcttgatacca 222  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4239306 gtagcttgtacaagtgcttttctattcagcttttgatgaagatcttgatacca 4239358  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 20970637 - 20970674
Alignment:
Q  36 tgacaatcaatttctatgtgctttgttctctcatggaa 73  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  20970637 tgacaatcaatttctaagtgttttgttctctcatggaa 20970674  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 15501428 - 15501338
Alignment:
Q  1 gaattagtcctgcctgcactttgtcgctaacaacatgacaatcaatttctatgtgctttgttctctcatggaatacagggttagcaactat 91  Q
    ||||||||| ||||| |||||| || ||||| |||||||||||| ||||||| ||||||||||||||||  ||| ||||||||||||||||    
T  15501428 gaattagtcatgccttcactttatctctaaccacatgacaatcattttctatatgctttgttctctcataaaatgcagggttagcaactat 15501338  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 34312117 - 34312077
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  34312117 acaacatgacaatcaatttcaatgtgttttgttctctcatg 34312077  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 4502571 - 4502531
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  4502571 acaacatgacaatcaatctcaatgtgttttgttctctcatg 4502531  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 15826123 - 15826083
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  15826123 acaacatgacaatcaatctcaatgtgttttgttctctcatg 15826083  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 46655331 - 46655258
Alignment:
Q  20 tttgtcgctaacaacatgacaatcaatttctatgtgctttgttctctcatggaatacagggttagcaactatat 93  Q
    |||||| || || |||||||||||||| || || |||||||| ||||||||||| |||||||||||| ||||||    
T  46655331 tttgtctcttactacatgacaatcaatctcaatatgctttgtcctctcatggaaaacagggttagcagctatat 46655258  T

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Target: scaffold1049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 197 - 237
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  197 acaacatgacaatcaatatcaatgtgttttgttctctcatg 237  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 28392565 - 28392605
Alignment:
Q  33 acatgacaatcaatttctatgtgctttgttctctcatggaa 73  Q
    ||||||||||| |||||||  ||||||||||||||||||||    
T  28392565 acatgacaatcgatttctacatgctttgttctctcatggaa 28392605  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 26083081 - 26083121
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  26083081 acaacatgacaatcaatctcaatgtgttttgttctctcatg 26083121  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 26106868 - 26106908
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  26106868 acaacatgacaatcaatctcaatgtgttttgttctctcatg 26106908  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 548670 - 548710
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  548670 acaacatgacaatcaatctcaatgtgttttgttctctcatg 548710  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 30279082 - 30279122
Alignment:
Q  30 acaacatgacaatcaatttctatgtgctttgttctctcatg 70  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  30279082 acaacatgacaatcaatctcaatgtgttttgttctctcatg 30279122  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 8165358 - 8165286
Alignment:
Q  21 ttgtcgctaacaacatgacaatcaatttctatgtgctttgttctctcatggaatacagggttagcaactatat 93  Q
    ||||| || ||||||||||||||||| ||||| || ||||| || |||||||| || || || ||||||||||    
T  8165358 ttgtctctcacaacatgacaatcaatctctatatgttttgtcctttcatggaagacgggatttgcaactatat 8165286  T

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