View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_23 (Length: 320)
Name: NF18124_low_23
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 40785159 - 40784855
Alignment:
| Q |
7 |
tgtagaaggaaacaagctaatacttgaggtcaattatttgtgagtgcctacctgatatgatacgagcaggtggatagctaggctgttgattgataaaaat |
106 |
Q |
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| T |
40785159 |
tgtagaaggaaacaagcta-tacttgaggtcaattatttgtgagtgcctacctgatatgatatgagcaggtggatagctaggctgttgattcataaaaat |
40785061 |
T |
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| Q |
107 |
agttctccatatatattttatttaccaaattgatcataataatatcacaaaatttaacccaatttggataagagatgctacttgcaaaccaacttgttaa |
206 |
Q |
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| T |
40785060 |
agttctccatatatattttatttaccaaattgatcataataatatcacaaaatttaacccaatttggataagagatgctacttgcaaaccaacttgttaa |
40784961 |
T |
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| Q |
207 |
tttattttatgaaaaatatatcaaaaacgttatcaatattgtcagcaaaatcagtaacattatagatacttatttaaacaaatgaattacccattttctt |
306 |
Q |
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| T |
40784960 |
cttattttatgaaaaatatatcaaaaacgttatcaatattgtcagcaaaatcaataacattatagatacttatttaaacaaatgaattaaccattttctt |
40784861 |
T |
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| Q |
307 |
cttctc |
312 |
Q |
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|||||| |
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| T |
40784860 |
cttctc |
40784855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 40792432 - 40792294
Alignment:
| Q |
83 |
gctaggctgttgattgataaaaatagttctccatatatattttatttaccaaattgatcata--ataatatcacaaaatttaacccaatttggataagag |
180 |
Q |
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|||||||||||||||| || |||||||||| ||||||||| |||| ||||||||||| ||| || ||||||||||||||||| |||||||||| || |
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| T |
40792432 |
gctaggctgttgattggtagaaatagttctacatatatatactatt-accaaattgatgatataatgatatcacaaaatttaactaaatttggatataag |
40792334 |
T |
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| Q |
181 |
a--tgctacttgcaaaccaacttgttaatttattttatga |
218 |
Q |
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| T |
40792333 |
aattgctacttgcaaaccaacttgttaatttattttatga |
40792294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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