View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_low_24 (Length: 318)

Name: NF18124_low_24
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_low_24
NF18124_low_24
[»] chr7 (11 HSPs)
chr7 (196-312)||(1536522-1536638)
chr7 (22-120)||(1552569-1552667)
chr7 (196-312)||(41218850-41218961)
chr7 (196-299)||(18238881-18238985)
chr7 (200-299)||(34353863-34353963)
chr7 (37-123)||(1104061-1104147)
chr7 (37-123)||(1543265-1543351)
chr7 (196-306)||(48218846-48218945)
chr7 (196-257)||(38791578-38791637)
chr7 (200-257)||(31823733-31823788)
chr7 (200-233)||(21154345-21154378)
[»] chr5 (13 HSPs)
chr5 (196-312)||(41758205-41758321)
chr5 (196-276)||(3460860-3460940)
chr5 (196-306)||(39223437-39223548)
chr5 (196-306)||(6271301-6271410)
chr5 (235-296)||(1974814-1974875)
chr5 (196-306)||(7083415-7083522)
chr5 (200-296)||(1172394-1172487)
chr5 (196-296)||(6427824-6427921)
chr5 (196-250)||(22704422-22704476)
chr5 (196-236)||(1974862-1974902)
chr5 (196-257)||(40016638-40016697)
chr5 (203-232)||(3460936-3460965)
chr5 (196-225)||(22302409-22302438)
[»] chr6 (7 HSPs)
chr6 (196-312)||(14154045-14154161)
chr6 (196-312)||(319749-319864)
chr6 (196-299)||(802355-802461)
chr6 (196-257)||(24174143-24174204)
chr6 (196-257)||(35054039-35054098)
chr6 (196-236)||(11718251-11718291)
chr6 (196-257)||(16444999-16445058)
[»] chr4 (17 HSPs)
chr4 (196-312)||(886473-886589)
chr4 (196-306)||(38131978-38132088)
chr4 (196-306)||(27760579-27760690)
chr4 (196-289)||(14329531-14329624)
chr4 (202-299)||(46814550-46814647)
chr4 (235-306)||(31823484-31823556)
chr4 (235-312)||(32936220-32936297)
chr4 (200-296)||(1227395-1227488)
chr4 (196-296)||(49065011-49065108)
chr4 (196-298)||(21712595-21712693)
chr4 (196-236)||(31823543-31823583)
chr4 (196-236)||(32936284-32936324)
chr4 (196-257)||(28797357-28797416)
chr4 (196-257)||(33162370-33162429)
chr4 (196-257)||(36173862-36173921)
chr4 (196-225)||(14989780-14989809)
chr4 (196-225)||(46567849-46567878)
[»] chr1 (15 HSPs)
chr1 (196-312)||(48567287-48567403)
chr1 (196-306)||(46179174-46179285)
chr1 (196-296)||(41872252-41872352)
chr1 (200-299)||(3659625-3659724)
chr1 (196-306)||(21483441-21483545)
chr1 (196-298)||(46924316-46924414)
chr1 (196-298)||(39223242-39223340)
chr1 (196-298)||(30308890-30308988)
chr1 (196-235)||(49597783-49597822)
chr1 (196-257)||(39650916-39650975)
chr1 (200-257)||(18171415-18171472)
chr1 (235-306)||(49597723-49597795)
chr1 (196-257)||(47486117-47486176)
chr1 (199-257)||(50066177-50066233)
chr1 (196-225)||(49594621-49594650)
[»] chr2 (7 HSPs)
chr2 (196-296)||(29132118-29132218)
chr2 (196-306)||(42121285-42121395)
chr2 (197-306)||(22495383-22495492)
chr2 (196-306)||(2154712-2154822)
chr2 (196-250)||(8556819-8556873)
chr2 (196-257)||(12967950-12968009)
chr2 (213-257)||(18394264-18394308)
[»] chr3 (11 HSPs)
chr3 (196-306)||(42385089-42385199)
chr3 (196-299)||(25575369-25575473)
chr3 (200-306)||(42994211-42994317)
chr3 (200-268)||(36720151-36720219)
chr3 (196-257)||(35485979-35486038)
chr3 (196-257)||(42948092-42948151)
chr3 (196-257)||(44834157-44834216)
chr3 (196-227)||(39415835-39415866)
chr3 (196-236)||(16932381-16932419)
chr3 (196-225)||(25744542-25744571)
chr3 (196-225)||(47559854-47559883)
[»] scaffold0861 (1 HSPs)
scaffold0861 (196-299)||(3153-3256)
[»] chr8 (9 HSPs)
chr8 (230-312)||(34471070-34471152)
chr8 (235-312)||(28704523-28704600)
chr8 (196-306)||(23542175-23542290)
chr8 (196-298)||(40416331-40416429)
chr8 (235-291)||(4640354-4640410)
chr8 (196-236)||(4640397-4640437)
chr8 (196-236)||(28704587-28704627)
chr8 (37-91)||(18755809-18755863)
chr8 (200-257)||(43635839-43635894)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 1536522 - 1536638
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1536522 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 1536621  T
Q  296 aagtaatcaatattctt 312  Q
    |||||||||||||||||    
T  1536622 aagtaatcaatattctt 1536638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 1552569 - 1552667
Alignment:
Q  22 tgaaaaacaagctttgaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgcaataattcttctcaagtatcattttcgat 120  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1552569 tgaaaaacaagctttgaagcatctacccctccatttacgttcatcaactttatgtcaaattaagctcttcaataattcttctcaagtatcattttcgat 1552667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 41218850 - 41218961
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    ||||||||||||||||||||||||||     ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  41218850 tctcattttattaatagaattcatac-----aataattgatacaataatttattcaaattcactaatttattctacttattttctcccttttggggtaaa 41218944  T
Q  296 aagtaatcaatattctt 312  Q
    ||||||||||| |||||    
T  41218945 aagtaatcaatcttctt 41218961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 18238881 - 18238985
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  18238881 tctcaatttattaaaagaattcatacaatacaataattgatacaataatttattccaattcactaaattattctacttattttctccctctttggggtaa 18238980  T
Q  295 aaagt 299  Q
     ||||    
T  18238981 gaagt 18238985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 34353863 - 34353963
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccctttt-ggggtaaaaag 298  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||| |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  34353863 attttattaatagaattcatacaatacaataattgatacaatagttcattcgaattcactaatttattctacttattttctcccttttgggggtaaaaag 34353962  T
Q  299 t 299  Q
    |    
T  34353963 t 34353963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 1104147 - 1104061
Alignment:
Q  37 gaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgcaataattcttctcaagtatcattttcgatcct 123  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||    
T  1104147 gaagcatctacccctccatttacgttcaacaactttatgtcaaattaacctcttcaataattcttctcaagtcttattttcgatcct 1104061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 1543265 - 1543351
Alignment:
Q  37 gaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgcaataattcttctcaagtatcattttcgatcct 123  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||    
T  1543265 gaagcatctacccctccatttacgttcaacaactttatgtcaaattaacctcttcaataattcttctcaagtcttattttcgatcct 1543351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 48218945 - 48218846
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||          ||||||||||||||||| ||||||||||    
T  48218945 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca----------ctacttattttctccctctttggggtaa 48218858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 38791637 - 38791578
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  38791637 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 38791578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 31823733 - 31823788
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  31823733 attttattaata--attcatacaatacaataattcttacaataatttattcaaattca 31823788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 21154378 - 21154345
Alignment:
Q  200 attttattaatagaattcatacaatacaataatt 233  Q
    ||||||||||||||||||||||||||||||||||    
T  21154378 attttattaatagaattcatacaatacaataatt 21154345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 41758205 - 41758321
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41758205 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 41758304  T
Q  296 aagtaatcaatattctt 312  Q
    ||||||||||| |||||    
T  41758305 aagtaatcaatcttctt 41758321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 3460860 - 3460940
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttatt 276  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3460860 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttatt 3460940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 39223548 - 39223437
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttgggg-taa 294  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||| |||||| |||    
T  39223548 tctcattttattaatagaattcatacaacagaataattgatacaataatttattcgaatttactaatttattctacttattttctccctcttggggataa 39223449  T
Q  295 aaagtaatcaat 306  Q
    ||||| ||||||    
T  39223448 aaagtgatcaat 39223437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 6271410 - 6271301
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |||| |||| ||||||| ||||||| |||||||||||    
T  6271410 tctcattttattaatagaattcatacaatacaattattgatacaataatttattcgaattcactaatatattatacttatattctccc-tttggggtaaa 6271312  T
Q  296 aagtaatcaat 306  Q
    |||| ||||||    
T  6271311 aagtgatcaat 6271301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 1974875 - 1974814
Alignment:
Q  235 atacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaa 296  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1974875 atacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaaa 1974814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 7083415 - 7083522
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| ||||||||||    
T  7083415 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttggggtaa 7083510  T
Q  295 aaagtaatcaat 306  Q
    || || ||||||    
T  7083511 aaggtgatcaat 7083522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 1172394 - 1172487
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaa 296  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    ||| | |||||||||||||||||| ||||||||||||    
T  1172394 attttattaatagaattcatacaatacaataactgatacaataatttattcgaattc----attaaatctacttattttctccctctttggggtaaaa 1172487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 6427921 - 6427824
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| ||||||||||    
T  6427921 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcaaaatcacta----aatctacttattttctccctctttggggtaa 6427826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 22704422 - 22704476
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattc 250  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  22704422 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattc 22704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 1974902 - 1974862
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1974902 tctcattttattaatagaattcatacaatacaataatttat 1974862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 40016638 - 40016697
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  40016638 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 40016697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 3460936 - 3460965
Alignment:
Q  203 ttattaatagaattcatacaatacaataat 232  Q
    ||||||||||||||||||||||||||||||    
T  3460936 ttattaatagaattcatacaatacaataat 3460965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 22302409 - 22302438
Alignment:
Q  196 tctcattttattaatagaattcatacaata 225  Q
    ||||||||||||||||||||||||||||||    
T  22302409 tctcattttattaatagaattcatacaata 22302438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 14154161 - 14154045
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14154161 tctcattttattaattgaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 14154062  T
Q  296 aagtaatcaatattctt 312  Q
    ||||||||||| |||||    
T  14154061 aagtaatcaatcttctt 14154045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 319864 - 319749
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  319864 tctcattttattaatagaattcatacaatacaataattgatacaatagtttattccaattcactaatttattctacttattttctccc-tttggggtaaa 319766  T
Q  296 aagtaatcaatattctt 312  Q
    ||||||||||| |||||    
T  319765 aagtaatcaatcttctt 319749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 802355 - 802461
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataat---ttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggt 292  Q
    |||||||||||||||||||||||||||||||||||||   | |||||| ||||||||| || ||| |||||||||||||||||||||||||| || || |    
T  802355 tctcattttattaatagaattcatacaatacaataattaataatacaacaatttattcgaaatcactaatttattctacttattttctccctattaggat 802454  T
Q  293 aaaaagt 299  Q
    |||||||    
T  802455 aaaaagt 802461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 24174204 - 24174143
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  24174204 tctcattttattaatagaattcataaaatacaataattgatacaataatttattcaaattca 24174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 35054098 - 35054039
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  35054098 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 35054039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 11718251 - 11718291
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  11718251 tctcattttattaatagaatttatacaatacaataatttat 11718291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 16445058 - 16444999
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  |||||||||||| |||||||  ||||||||||||||| ||||||    
T  16445058 tctcattttattaata--attcatacaatataataattcttacaataatttattcaaattca 16444999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 886473 - 886589
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  886473 tctccttttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 886572  T
Q  296 aagtaatcaatattctt 312  Q
    ||||||||||| |||||    
T  886573 aagtaatcaatcttctt 886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 38132088 - 38131978
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38132088 tctcattttattaatagaatttatacaatacaataattgatacaataattgattccaattcactaatttattctacttattttctcccttttggggtaaa 38131989  T
Q  296 aagtaatcaat 306  Q
    |||||||||||    
T  38131988 aagtaatcaat 38131978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 27760579 - 27760690
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  27760579 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctatttattttctccctctttggggtaa 27760678  T
Q  295 aaagtaatcaat 306  Q
    ||||| ||||||    
T  27760679 aaagtgatcaat 27760690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 14329624 - 14329531
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttgg 289  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  14329624 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctccctcttgg 14329531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 46814647 - 46814550
Alignment:
Q  202 tttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagt 299  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  46814647 tttattaatagaattcatacaatacaataattgatacaataatttattcgaattcacaaatttattctacttattttctccctcttggggtaaaaagt 46814550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 31823556 - 31823484
Alignment:
Q  235 atacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaaagtaatcaat 306  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31823556 atacaataatttattccaattcactaatttattctacttattttctccctctttggggtaaaaagtaatcaat 31823484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 32936297 - 32936220
Alignment:
Q  235 atacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagtaatcaatattctt 312  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| | |||| |||||    
T  32936297 atacaataatttattccaactcactaatttattctacttattttctccctcttggggtaaaaagtgaccaatcttctt 32936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 1227395 - 1227488
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaa 296  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||    | |||||||||||||| ||| ||||||||||||    
T  1227395 attttattaatagaattcgtacaatacaataattgatacaataatttattcgaattcacta----aatctacttattttcttcctctttggggtaaaa 1227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 49065011 - 49065108
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| ||||| ||||    
T  49065011 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttggagtaa 49065106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 21712595 - 21712693
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||||||| || ||||||| |    ||||||||||||| ||| || |||| ||    
T  21712595 tctcattttattaatagaattcatacaatacaataattgatacaacagtttattcgaaatcagtaaat----ctacttattttcttcctctttgggttaa 21712690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 31823583 - 31823543
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31823583 tctcattttattaatagaattcatacaatacaataatttat 31823543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 32936324 - 32936284
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32936324 tctcattttattaatagaattcatacaatacaataatttat 32936284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 28797416 - 28797357
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  28797416 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 28797357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 33162429 - 33162370
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  33162429 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 33162370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 36173862 - 36173921
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||| ||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  36173862 tctcatttttttaata--attcatacaatacaataattcttacaataatttattcaaattca 36173921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 14989780 - 14989809
Alignment:
Q  196 tctcattttattaatagaattcatacaata 225  Q
    ||||||||||||||||||||||||||||||    
T  14989780 tctcattttattaatagaattcatacaata 14989809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 46567878 - 46567849
Alignment:
Q  196 tctcattttattaatagaattcatacaata 225  Q
    ||||||||||||||||||||||||||||||    
T  46567878 tctcattttattaatagaattcatacaata 46567849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 48567403 - 48567287
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48567403 tctcattttattaatagaattcatacaatataataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 48567304  T
Q  296 aagtaatcaatattctt 312  Q
    ||||||||||| |||||    
T  48567303 aagtaatcaatcttctt 48567287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 46179285 - 46179174
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  46179285 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcattaatttattctacttattttcttcctctttggggtaa 46179186  T
Q  295 aaagtaatcaat 306  Q
    ||||| ||||||    
T  46179185 aaagtgatcaat 46179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 41872352 - 41872252
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  41872352 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttatgctacttattttctcccttttgggataaa 41872253  T
Q  296 a 296  Q
    |    
T  41872252 a 41872252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 3659625 - 3659724
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagt 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  3659625 attttattaatagaattcatacaatacaataattgatacaataatttattcgaattcacaaatttattctacttattttctccctcttggggtaaaaagt 3659724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 21483545 - 21483441
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    ||||||||||||||||||||||||||||||     ||| |||||||||||||||| |||||| |||||||||||||||||||||||||| || |||||||    
T  21483545 tctcattttattaatagaattcatacaata-----attgatacaataatttattcgaattcactaatttattctacttattttctccctctt-gggtaaa 21483452  T
Q  296 aagtaatcaat 306  Q
    |||| ||||||    
T  21483451 aagtgatcaat 21483441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 46924414 - 46924316
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||    ||| | |||||||||||||||||| || |||| ||    
T  46924414 tctcattttattaatagaattcatacaatacaataattgatacaataatttattcgaaatc----attaaatctacttattttctccctctttgggttaa 46924319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 39223340 - 39223242
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| || |||| ||    
T  39223340 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttgggttaa 39223245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 30308988 - 30308890
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| || |||| ||    
T  30308988 tctcattttattaatagaattcatacaatataataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttgggttaa 30308893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 49597822 - 49597783
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataattta 235  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49597822 tctcattttattaatagaattcatacaatacaataattta 49597783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 39650975 - 39650916
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  39650975 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 39650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 18171415 - 18171472
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    |||||||||| |||||||||||||| |||||||| |||| ||||||||||| ||||||    
T  18171415 attttattaacagaattcatacaattcaataattgatacgataatttattcgaattca 18171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 49597795 - 49597723
Alignment:
Q  235 atacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaaagtaatcaat 306  Q
    |||||||||||||  ||  |||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  49597795 atacaataatttaccccgcttcactaatttattctatttattttctccctctttggggtaaaaagtgatcaat 49597723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 47486176 - 47486117
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||| ||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  47486176 tctcattctattaata--attcatacaatacaataattcttacaataatttattcaaattca 47486117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 50066233 - 50066177
Alignment:
Q  199 cattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    |||||||||||||  ||||||||||||||||||||  ||||||||| ||||| ||||||    
T  50066233 cattttattaata--attcatacaatacaataattcttacaataatatattcaaattca 50066177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 49594650 - 49594621
Alignment:
Q  196 tctcattttattaatagaattcatacaata 225  Q
    ||||||||||||||||||||||||||||||    
T  49594650 tctcattttattaatagaattcatacaata 49594621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 29132118 - 29132218
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  29132118 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctccctcttggggtaaa 29132217  T
Q  296 a 296  Q
    |    
T  29132218 a 29132218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 42121285 - 42121395
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  42121285 tctcattttattaatagaattcattcaatacaataattgatacaataatttattcgaattcactaatttattctacttattttctccctcttggggtaaa 42121384  T
Q  296 aagtaatcaat 306  Q
    |||| ||||||    
T  42121385 aagtgatcaat 42121395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 22495383 - 22495492
Alignment:
Q  197 ctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaa 296  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  22495383 ctcattttattaatagaattcatacaatataataattgatacactaatttattcgaattcactaatttattctacttattttctccctcttggggtaaaa 22495482  T
Q  297 agtaatcaat 306  Q
    ||| ||||||    
T  22495483 agtgatcaat 22495492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 2154712 - 2154822
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  2154712 tctcattttattaatagaattcaaacaatacaataattgatacaacaatttattcgaattcactaatttattctacttattatcttccttttggggtaaa 2154811  T
Q  296 aagtaatcaat 306  Q
    |||| ||||||    
T  2154812 aagtgatcaat 2154822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 8556873 - 8556819
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattc 250  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  8556873 tctcattttattaatagaattcatacaatacaataattgataaaacaatttattc 8556819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 12968009 - 12967950
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  12968009 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 12967950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 18394264 - 18394308
Alignment:
Q  213 aattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||| |||||||  ||||||||||||||| ||||||    
T  18394264 aattcatacaatagaataattcttacaataatttattcaaattca 18394308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 42385089 - 42385199
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||    
T  42385089 tctcattttattaatagaattcatacaatacaataattgatacaataatttattcgaattcactaatttattctacttattttttccctcttggggtaaa 42385188  T
Q  296 aagtaatcaat 306  Q
    |||| ||||||    
T  42385189 aagtgatcaat 42385199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 25575473 - 25575369
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 294  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  25575473 tctcattttattaatagaactcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctccctctttggggtaa 25575374  T
Q  295 aaagt 299  Q
    |||||    
T  25575373 aaagt 25575369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 42994317 - 42994211
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagt 299  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||||||||||||| || ||||| ||||||||    
T  42994317 attttattaatagaattcatacaatacaatatttgatacaataatttattcgaattcactaatttattctacttattttctctctcttgggttaaaaagt 42994218  T
Q  300 aatcaat 306  Q
     ||||||    
T  42994217 gatcaat 42994211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 36720219 - 36720151
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattc 268  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||| ||||||    
T  36720219 attttattaatagaattcatacaatagaataattgatacaataatttattcgaattcactaaattattc 36720151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 35486038 - 35485979
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  35486038 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 35485979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 42948151 - 42948092
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||||||    
T  42948151 tctcattttattaatat--ttcatacaatacaataattcttacaataatttattcaaattca 42948092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 44834216 - 44834157
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||| ||||||||| ||||||    
T  44834216 tctcattttattaata--attcatacaatacaataattcttacaacaatttattcaaattca 44834157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 39415866 - 39415835
Alignment:
Q  196 tctcattttattaatagaattcatacaataca 227  Q
    ||||||||||||||||||||||||||||||||    
T  39415866 tctcattttattaatagaattcatacaataca 39415835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 16932381 - 16932419
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  16932381 tctcattttattaata--attcatacaatacaataatttat 16932419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 25744542 - 25744571
Alignment:
Q  196 tctcattttattaatagaattcatacaata 225  Q
    ||||||||||||||||||||||||||||||    
T  25744542 tctcattttattaatagaattcatacaata 25744571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 47559854 - 47559883
Alignment:
Q  196 tctcattttattaatagaattcatacaata 225  Q
    ||||||||||||||||||||||||||||||    
T  47559854 tctcattttattaatagaattcatacaata 47559883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 3153 - 3256
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||    
T  3153 tctcattttattaatagaattcatacaatacaataattgataaaataatttactcgaattcagtaatttattctacttattttctccctcttggggtcaa 3252  T
Q  296 aagt 299  Q
    ||||    
T  3253 aagt 3256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 34471070 - 34471152
Alignment:
Q  230 aatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagtaatcaatattctt 312  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34471070 aattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaaaagtaatcaatcttctt 34471152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 28704600 - 28704523
Alignment:
Q  235 atacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagtaatcaatattctt 312  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28704600 atacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaaaagtaatcaatcttctt 28704523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 23542175 - 23542290
Alignment:
Q  196 tctcattttattaatagaattcatacaata-----caataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggg 290  Q
    ||||||||||||||||||||| ||||||||     |||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||| | |||    
T  23542175 tctcattttattaatagaattaatacaatataatacaataattaatacaataatttattcgaaatcactaatttattctacttattttctccctctcggg 23542274  T
Q  291 gtaaaaagtaatcaat 306  Q
    ||||||||| ||||||    
T  23542275 gtaaaaagtgatcaat 23542290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 40416331 - 40416429
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| || |||| ||    
T  40416331 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttgggttaa 40416426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 4640410 - 4640354
Alignment:
Q  235 atacaataatttattccaattcagtaatttattctacttattttctcccttttgggg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  4640410 atacaataatttattccaattcactaatttattctacttattttctccctcttgggg 4640354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 4640437 - 4640397
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4640437 tctcattttattaatagaattcatacaatacaataatttat 4640397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 28704627 - 28704587
Alignment:
Q  196 tctcattttattaatagaattcatacaatacaataatttat 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28704627 tctcattttattaatagaattcatacaatacaataatttat 28704587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 18755809 - 18755863
Alignment:
Q  37 gaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgc 91  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||    
T  18755809 gaagcatctacccctctatttacgatcaacaactttatgtccaattaagccctgc 18755863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 43635894 - 43635839
Alignment:
Q  200 attttattaatagaattcatacaatacaataatttatacaataatttattccaattca 257  Q
    ||||||||||||  ||||||||||||||||||||  |||||||||||| || ||||||    
T  43635894 attttattaata--attcatacaatacaataattcttacaataatttagtcaaattca 43635839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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