View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_low_25 (Length: 305)
Name: NF18124_low_25
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 49161877 - 49162060
Alignment:
| Q |
84 |
ttctctataaatatgttcacaagaacctcaatccattacaagaagtcggtcaatgttttgaagcaaaatacaaccagcactgctctacacttattagagt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49161877 |
ttctctataaatatgttcacaagaacctcaatccattataagaagtcagtcaaggttttgaagcaaagtacaaccagcactgctctacacttattagagt |
49161976 |
T |
|
| Q |
184 |
tgatcgaactaacaatacaatcaaattcaaat-------------cactcttttgaagccacgctcccaaacaaatttcaatcc |
254 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49161977 |
tgatctaactaacaatacaatcaaactcaaatcaacatgaagctccactcttttgaagccacgctcccaaacaaacttcaatcc |
49162060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 49160101 - 49160183
Alignment:
| Q |
1 |
ctatagatacgaacattcatctctggtaacttttgtccatgttgcctataaaggaaaagctcactttcaaaagtttggttact |
83 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
49160101 |
ctatatatacgaacattcatctctggtaacttttgtccatgttgcctataaaggaaaagctcactgttaaaagtttggttact |
49160183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 49162070 - 49162107
Alignment:
| Q |
252 |
tccccaaagttccaccacaaatgcactacaacaccata |
289 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
49162070 |
tccccaaagttccactacaaatgcattacaacaccata |
49162107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University