View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_27 (Length: 287)
Name: NF18124_low_27
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 35991274 - 35991538
Alignment:
| Q |
15 |
ttcaactcatatcactttcaatgtgagactcttaatgcccaaaattaatgttaattaataataagcgcacacatatataccttaatttgttgctaaaata |
114 |
Q |
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| T |
35991274 |
ttcaactcatatcactttcaatgtgagactcttaacgcccagaattaatgttaattaataataagcgcacacatatataccttaatttgttgctaaaata |
35991373 |
T |
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| Q |
115 |
gatgaaggagtgaattgcggggcaaatcttctttggcagtgagtttgtttgcatcatctgaatgatcaagccaactactgccaaagaagtcattgcccag |
214 |
Q |
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| T |
35991374 |
gatgaaggagtgaattgcggggcaaatcttctttggcggtgagtttgtttgcatcatctgaatgatcaagtcaactactgccaaagaagtcattgcccag |
35991473 |
T |
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| Q |
215 |
taatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatg |
279 |
Q |
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| T |
35991474 |
taatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatg |
35991538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 35980627 - 35980740
Alignment:
| Q |
122 |
gagtgaattgcggggcaaatcttctttggcagtgagtttgtttgcatcatctgaatgatcaagccaactactgccaaagaagtcattgcccagtaatgca |
221 |
Q |
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| T |
35980627 |
gagtgaattgcggggcaaatcttctttggcagtgagtttgtttgcatcatctgaaagatcaagtgaactactgccaaaaaagtcattgcccagtaatgca |
35980726 |
T |
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| Q |
222 |
cctacacatgagta |
235 |
Q |
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| T |
35980727 |
cttacacatgagta |
35980740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 4985080 - 4985015
Alignment:
| Q |
87 |
atatataccttaatttgttgctaaaatagatgaaggagtgaattgcggggcaaatcttctttggca |
152 |
Q |
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| T |
4985080 |
atatataccttaatttcttgataaaatacatgaaagagtgaattgcggggaaaatcttctttggca |
4985015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 4930121 - 4930048
Alignment:
| Q |
87 |
atatataccttaatttgttgctaaaatagatgaaggagtgaattgcggggcaaatcttctttggcagtgagttt |
160 |
Q |
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| T |
4930121 |
atatataccttaatttcttgataaaatacatgatggagtgaattatggggtaaatcatctttgggaatgagttt |
4930048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 4950766 - 4950723
Alignment:
| Q |
91 |
ataccttaatttgttgctaaaatagatgaaggagtgaattgcgg |
134 |
Q |
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| T |
4950766 |
ataccttaatttcttgataaaatacatgaaggagtgaattgcgg |
4950723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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