View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_low_29 (Length: 279)
Name: NF18124_low_29
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 38123842 - 38123604
Alignment:
| Q |
23 |
tttattgtggcattttcttgaaaacggtgataaagtaacaatacccttggagcctgcaaaaccctcccatcaacttgtgtgaaatcgggcgttattgaaa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
38123842 |
tttattgtggctttttcttgaaaacggtgataaagtaacaatacccgtggagcctgcaaaaccctcccatcaacttgggtgaactcggatgttattgaaa |
38123743 |
T |
|
| Q |
123 |
tgccacagttacgtagcattggttcagagccatagttgcttgctttgaacccctgtaaatcagcaaatagtattcagtgaagtgacattcagatgacaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
38123742 |
tgccacagttacgtagcattggttcagagccatagttgcttgctttcaacgcctgtaaatcagcaaaaataattcagtgaagtgacattcagacgacaat |
38123643 |
T |
|
| Q |
223 |
tcattatgtttataaaagagactcacattatacaagacc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38123642 |
tcattatgtttataaaagagactcacattagacaagacc |
38123604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 38115490 - 38115330
Alignment:
| Q |
60 |
acaatacccttggagcctgcaaaaccctcccatcaacttgtgtgaaatcgggcgttattgaaatgccacagttacgtagcattggttcagagccatagtt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
38115490 |
acaatacccttggagcctgcaaaaccctcccatcaacttgtgtgaacccagatgttattgaaattccacagttacgtagcatgggttcagagccatagtc |
38115391 |
T |
|
| Q |
160 |
gcttgctttgaacccctgtaaatcagcaaatagtattcagtgaagtgacattcagatgaca |
220 |
Q |
| |
|
|||| ||| || |||||||||||| ||||| ||||||| ||||||||| ||| |||||| |
|
|
| T |
38115390 |
acttgtttttaaggcctgtaaatcagaaaataatattcagcgaagtgacaatcatatgaca |
38115330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 14916245 - 14916079
Alignment:
| Q |
62 |
aatacccttggagcctgcaaaaccctcccatcaacttgtgtgaaatcgggcgttattgaaatgccacagttacgtagcattggttcagagccatagttgc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | || || |||||| |||||||||| |||||||||| || |||||||| ||||||| |
|
|
| T |
14916245 |
aatacccttggagcctgcaaaaccctcccatcaacttgtgtaagatgcggttttattgtaatgccacaggtacgtagcatgggctcagagccgtagttgc |
14916146 |
T |
|
| Q |
162 |
ttgctttgaacccctgtaaatcagcaaatagtattcagtgaagtgacattcagatgacaaatcatta |
228 |
Q |
| |
|
||| || ||| ||||| |||||| ||||| ||| ||| |||| ||||| | ||||||| |||||| |
|
|
| T |
14916145 |
ttgtttgcaacgcctgtgaatcagaaaataacatttagtaaagtaacatttatatgacaattcatta |
14916079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University