View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18124_low_3 (Length: 593)
Name: NF18124_low_3
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 580
Target Start/End: Complemental strand, 20616678 - 20616112
Alignment:
| Q |
11 |
caaaggaaatagaaaaaattagtcaatgtccaaacaaataaaagggctcgacgaccacataaaaaaccttaaaccaaaagtctcattatatgccttcaac |
110 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| |||||||| | ||| ||| ||| |||||| |||||||||||||||||||||||||| |
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|
| T |
20616678 |
caaagaaaatagaaaaaattagtccatgtccaaacaaataaaatggctcgaccatcacgtaagaaaacttaaatcaaaagtctcattatatgccttcaac |
20616579 |
T |
|
| Q |
111 |
caccaaaaagagtgtaatttcactttctctagtagttggttagcagtgctttctatgttcttaaataatctattgttgcgctcggtccagataactcaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
20616578 |
caccaaaaagagtgtaatttcactttctctattagttggttagcagtgattactatgttcttaaataatctgttgttgcgctcggtccagataactcaaa |
20616479 |
T |
|
| Q |
211 |
cacaacaaaaccaaagaaactgcataaaggagagctgagactgagtaccatctgctgagtgcacaaattgaacaaaatggtcgcttaaatgatcctgagt |
310 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20616478 |
cacaacaaagccaaagaagctgcataaaggagcgccgagactgagtaccatctgctgagtgcacaaattgaacaaaatggtcgcttaaatgatcctgagt |
20616379 |
T |
|
| Q |
311 |
agcagattcaacaccaatccaagatctaacaagactccaaagagaaataaaagagagacaagattaaaacacatgatgtgccgactctatcgctccacac |
410 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| || ||||||||| |||||||| |
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|
| T |
20616378 |
aacggattcaacaccaatccaagatctaacaagactccaaagagaagtaaaagagggacaag---aaaacacatgatgagcagactctatcactccacac |
20616282 |
T |
|
| Q |
411 |
cctatcacacaatattaatatcttaccattgaattaagatatcatagagattctcatgtatagttatgactcaagtgtctaataagttgcagaactataa |
510 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
20616281 |
cctgtcacacaatattaatatcttaccattgaattaagataacatagagattctcatttatagttatgactcgagtgcctaataagttgcagaactataa |
20616182 |
T |
|
| Q |
511 |
acaaaacaaacgnnnnnnntgtagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagt |
580 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20616181 |
acaaaacaaacgaaaaaaatatagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagt |
20616112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 411
Target Start/End: Original strand, 9909321 - 9909710
Alignment:
| Q |
23 |
aaaaaattagtcaatgtccaaacaaataaaagggctcgacgaccacataaaaaaccttaaaccaaaagtctcattatatgccttcaaccaccaaaaagag |
122 |
Q |
| |
|
|||||||||| | || ||| ||||| ||| ||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
9909321 |
aaaaaattagccgatacccagacaaacaaatgggctcgaccaccacatatggaagcttaaaccaaaagtctcattatatgcctttaaccactaaaaagaa |
9909420 |
T |
|
| Q |
123 |
tgtaatttcactttctctagtagttggt--tagcagtgctttctatgttcttaaataatctattgttgcgctcggtccagataactcaaacacaacaaaa |
220 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| ||| |||| ||||||||||||||| | |||||| | |||||||||||||| ||||||||||||| |
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|
| T |
9909421 |
tgtaatttcactttctctaggagatggtgatagtggtgatttccatgttcttaaataatttgttgttgtgttcggtccagataacccaaacacaacaaag |
9909520 |
T |
|
| Q |
221 |
ccaaagaaactgcataaaggagagctgagactgagtaccatctgctgagtgcacaaattgaacaaaatggtcgcttaaatgatcctgagtagcagattca |
320 |
Q |
| |
|
|||| || |||||||||||| || || | ||| | |||||| || |||| |||||||||||||||||| ||||| ||||| | |||| ||||| |
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| T |
9909521 |
tcaaa-aagttgcataaaggagcactaaggccgaggatcatctgaagaatgcataaattgaacaaaatggtcacttaagtgatctaggtcagcaaattca |
9909619 |
T |
|
| Q |
321 |
acaccaatccaagatctaacaagactccaaagagaaataaaagagagacaagattaaaacacatgatgtgccgactctatcgctccacacc |
411 |
Q |
| |
|
|||| |||||| |||||||||||| |||||| ||| ||||||| ||||| || ||||||||||| |||||||| | |||||||||| |
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|
| T |
9909620 |
acactaatccataatctaacaagaccccaaagggaatcaaaagagggacaatataggaacacatgatgagccgactccgtggctccacacc |
9909710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 418 - 580
Target Start/End: Complemental strand, 20620352 - 20620188
Alignment:
| Q |
418 |
cacaatattaatatcttaccattgaattaagatatcatagagattctcatgtatagttat--gactcaagtgtctaataagttgcagaactataaacaaa |
515 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20620352 |
cacaatatcaatatcttaccattgaattaagatatcataaagattctcatgtatagtcatgagactcaagtgtctaataagttgcagaattataaacaaa |
20620253 |
T |
|
| Q |
516 |
acaaacgnnnnnnntgtagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagt |
580 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
20620252 |
acaaacaaaaataatgtagaactagatttgctgagtgtcacaaatctcatatgtttgatgatagt |
20620188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 418 - 580
Target Start/End: Original strand, 12058919 - 12059083
Alignment:
| Q |
418 |
cacaatattaatatcttaccattgaattaagatatcatagagattctcatgtatagttat--gactcaagtgtctaataagttgcagaactataaacaaa |
515 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||||||| || |||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
12058919 |
cacaatatcaatatcctaccattaaattaagatatcataaagattctaatgtatagtcatgagactcatgtgtcaaataagttgcagaattataaacaaa |
12059018 |
T |
|
| Q |
516 |
acaaacgnnnnnnntgtagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagt |
580 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
12059019 |
acaaacaaaaataatgtagaactagatttgctgagtgtcacaaatctcatatgtttgatgatagt |
12059083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 1179179 - 1178984
Alignment:
| Q |
23 |
aaaaaattagtcaatgtccaaacaaataaaagggctcgacgaccacataaaaaaccttaaaccaaaagtctcattatatgccttcaaccaccaaaaagag |
122 |
Q |
| |
|
|||||||||| | || |||| ||||| |||||| |||| |||||||| ||| |||||| ||||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
1179179 |
aaaaaattagccgatatccagacaaacaaaaggt-tcgatcaccacatatgaaagcttaaatcaaaagtcttattatatgctttcaaccaccaaaaataa |
1179081 |
T |
|
| Q |
123 |
tgtaatttcactttctctagtagttggttagcagtgctttctatgttcttaaataatctattgttgcgctcggtccagataactcaaacacaacaaa |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||| | || ||||||||||||| ||||||| | |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
1179080 |
tgtaatttcaatttctctagtagttggtgtgtggtactttctatgttctcaaataatttgttgttgcgctcgttcaagataactcaaacacaacaaa |
1178984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 11709104 - 11709226
Alignment:
| Q |
78 |
cttaaaccaaaagtctcattatatgccttcaaccaccaaaaagagtgtaatttcactttctctagtagttggttagcagtgctttctatgttcttaaata |
177 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||| || |||| ||| ||| |||| ||||||||||| | |
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|
| T |
11709104 |
cttagaccaaaagtctcattatgtgcctttaaccacaaaaaagaatgtaatttcactttctctagcagctggtgagcggtgatttccatgttcttaaaaa |
11709203 |
T |
|
| Q |
178 |
atctattgttgcgctcggtccag |
200 |
Q |
| |
|
|| | |||||||| ||||||||| |
|
|
| T |
11709204 |
atttgttgttgcgttcggtccag |
11709226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 14852875 - 14852797
Alignment:
| Q |
160 |
tttctatgttcttaaataatctattgttgcgctcggtccagataactcaaacacaacaaaaccaaagaaactgcataaa |
238 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||| |||| || || ||||||||||||| ||||| || ||||||||| |
|
|
| T |
14852875 |
tttccatgttcttgaataatctattgttttgctcgatccacattacccaaacacaacaaagccaaataatctgcataaa |
14852797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 19837215 - 19837311
Alignment:
| Q |
23 |
aaaaaattagtcaatgtccaaacaaataaaagggctcgacgaccacataaaaaaccttaaaccaaaagtctcattatatgccttcaaccaccaaaaa |
119 |
Q |
| |
|
|||| ||||||| ||| ||| ||||| ||||||||||||| |||||||| ||| ||||||||||| | |||||| |||||||||||| ||||| |
|
|
| T |
19837215 |
aaaagattagtcgatggccagacaaacaaaagggctcgaccaccacatatgaaaggttaaaccaaaacttgcattatgcgccttcaaccacaaaaaa |
19837311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 19837367 - 19837411
Alignment:
| Q |
175 |
ataatctattgttgcgctcggtccagataactcaaacacaacaaa |
219 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
19837367 |
ataatctgttgttgtgctcggtccatataactcaaacacaacaaa |
19837411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 41730964 - 41731001
Alignment:
| Q |
104 |
cttcaaccaccaaaaagagtgtaatttcactttctcta |
141 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
41730964 |
cttcatccaccaaaaagagtgtaatttgactttctcta |
41731001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 16169493 - 16169421
Alignment:
| Q |
166 |
tgttcttaaataatctattgttgcgctcggtccagataactcaaacacaacaaaaccaaagaaactgcataaa |
238 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| | ||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
16169493 |
tgttcttgaataatctattgttgtgctcagtccataacactcagacacaacaaagtcaaagaagctgcataaa |
16169421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 6520856 - 6520816
Alignment:
| Q |
27 |
aattagtcaatgtccaaacaaataaaagggctcgacgacca |
67 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
6520856 |
aattagtcgatgcccaaacaaataaaagggctcgaccacca |
6520816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 5917148 - 5917267
Alignment:
| Q |
29 |
ttagtcaatgtccaaacaaataaaagggctcgacgaccacataaaaaaccttaaaccaaaagtctcattatatgccttcaaccaccaaaaagagtgtaat |
128 |
Q |
| |
|
|||| |||||| || ||||| |||||| |||||| |||||||| ||| ||||||||||| | ||||||| | |||| |||| ||||||| |||||| |
|
|
| T |
5917148 |
ttagccaatgttcatacaaacaaaaggtctcgaccaccacatatgaaagtttaaaccaaaattgacattataagttttcagccacaaaaaagaatgtaat |
5917247 |
T |
|
| Q |
129 |
ttcactttctctagtagttg |
148 |
Q |
| |
|
|| ||||| ||||| ||||| |
|
|
| T |
5917248 |
ttgactttttctagcagttg |
5917267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 32191032 - 32191091
Alignment:
| Q |
17 |
aaatagaaaaaattagtcaatgtccaaacaaataaaagggctcgacgaccacataaaaaa |
76 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
32191032 |
aaatacaacaaattagtcaatgctcaaacaaataaacgggctcgaccaccacatacaaaa |
32191091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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