View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_31 (Length: 254)
Name: NF18124_low_31
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 441986 - 441752
Alignment:
| Q |
9 |
gataattctgttaaagctagaaaacgtagctttttcaaaatagcggtaactctaaatgattttgccaaactcattgccataccaaacaagcactcaatct |
108 |
Q |
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| T |
441986 |
gataattttgttaaagctagaaaacgtagctttttcaaaacagcagtgactccagatgattttgccaaactcattgcgataccaaacaagcactcaatct |
441887 |
T |
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| Q |
109 |
tatgcaagagttgtgagaaactaattgtggaagtccatgtcgcaaaatcaaaattcaaatgtttgaatgcttggtttcactttttgatgagacaaattta |
208 |
Q |
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| T |
441886 |
tatacaagagttgtgagaaattaattgtggaagtccatgtctcaaaatcaaaattcaaatgtttgaatgcttggttccactttttgatgagacaaattta |
441787 |
T |
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| Q |
209 |
attttagggtgtagaattgattttgatatgtttgg |
243 |
Q |
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| T |
441786 |
attttagggggtagaattgattttgatatgtttgg |
441752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 15478186 - 15478118
Alignment:
| Q |
179 |
ttggtttcactttttgatgagacaaatttaattttag-ggtgtagaattgattttgatatgtttggttg |
246 |
Q |
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| T |
15478186 |
ttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttggttg |
15478118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 247
Target Start/End: Complemental strand, 36780264 - 36780233
Alignment:
| Q |
216 |
ggtgtagaattgattttgatatgtttggttgt |
247 |
Q |
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| T |
36780264 |
ggtgtagaattgattttgatatgtttggttgt |
36780233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 26550457 - 26550495
Alignment:
| Q |
216 |
ggtgtagaattgattttgatatgtttggttgtactcaac |
254 |
Q |
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| T |
26550457 |
ggtgtagaattgattttgacatgtttggttgtactcaac |
26550495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Complemental strand, 24776241 - 24776211
Alignment:
| Q |
215 |
gggtgtagaattgattttgatatgtttggtt |
245 |
Q |
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| T |
24776241 |
gggtgtagaattgattttgatatgtttggtt |
24776211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 8182210 - 8182182
Alignment:
| Q |
217 |
gtgtagaattgattttgatatgtttggtt |
245 |
Q |
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| T |
8182210 |
gtgtagaattgattttgatatgtttggtt |
8182182 |
T |
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