View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_low_32 (Length: 251)

Name: NF18124_low_32

Description: NF18124

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18124_low_32

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 225; E-Value: 1e-124

Query Start/End: Original strand, 19 - 251

Target Start/End: Original strand, 16202748 - 16202980

Alignment:

Q	19	tcaccagttgttgtctcgcctgtttcactgccatatccaatctttgaagcaaccgcgtttgtagcatcagcggctttgttagtgactgcagacgctgcag	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16202748	tcaccagttgttgtctcgcctgtttcactgccatatccaatctttgaagcaaccgcgtttgtagcatcagcggctttgttagtgactgcagacgctgcag	16202847	T

Q	119	agtagattttgtctgtgtaaccgctttgattcaatggcgcttcagcagtagttgtctcccctttctctccatatccaagcttcgaagctaccgcattttt	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16202848	agtagattttgtctgtgtaactgctttgattcaatggcgcttcagcagtagttgtctcccctttctctccatatccaagcttcgaagctaccgcattttt	16202947	T

Q	219	agcactggcagctgtgtcggcaattgcagaagt	251	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16202948	agcaccggcagctgtgtcggcaattgcagaagt	16202980	T

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Target: chr6; HSP #2

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 52 - 137

Target Start/End: Original strand, 16202514 - 16202599

Alignment:

Q	52	tatccaatctttgaagcaaccgcgtttgtagcatcagcggctttgttagtgactgcagacgctgcagagtagattttgtctgtgta	137	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16202514	tatccaagctttgaagcaacggcatttttagcaccagcagctttgtcggtgactgcagaagctgcattatagattttgtctgtgta	16202599	T

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