View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_33 (Length: 251)
Name: NF18124_low_33
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 25168218 - 25168439
Alignment:
| Q |
13 |
aaaatcatatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattg |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25168218 |
aaaatcaaatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggtttttggataatctccattg |
25168317 |
T |
|
| Q |
113 |
gccaagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatatctccttaattgtgttaatttggatggtataattatataagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25168318 |
gccaagggatccataaacctataattaaacaaagaaattgaataagttatcatataaatctccttaattgtgttaatttggatggtataattatataagt |
25168417 |
T |
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| Q |
213 |
tttatctttttaatgaacttac |
234 |
Q |
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||||||||| |||||||||||| |
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| T |
25168418 |
tttatctttgtaatgaacttac |
25168439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 25253048 - 25252827
Alignment:
| Q |
13 |
aaaatcatatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattg |
112 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
25253048 |
aaaatcaaatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgatctgactaaggctctcatggttttaggataatctccattg |
25252949 |
T |
|
| Q |
113 |
gccaagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatatctccttaattgtgttaatttggatggtataattatataagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25252948 |
gccaagggatccataaacctataattaaacaaagaaattgaataagttatcatataaatctccttaattgtgttaatttggatggtataattatataagt |
25252849 |
T |
|
| Q |
213 |
tttatctttttaatgaacttac |
234 |
Q |
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||||||||| |||||||||||| |
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| T |
25252848 |
tttatctttgtaatgaacttac |
25252827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 25179883 - 25180041
Alignment:
| Q |
13 |
aaaatcatatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattg |
112 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||| ||||||||||||||| |
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| T |
25179883 |
aaaatcaaatgaaccactgacttgcttagattgctcttttgtaaactttggtaaccttgatctaaccaaggctctcatggtttttggataatctccattg |
25179982 |
T |
|
| Q |
113 |
gccaagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatat |
171 |
Q |
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|||||||||||||||||||||||||| | | |||||| |||||||||||||||||||| |
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| T |
25179983 |
accaagggatccataaacctataattatatatagaaatggaataagttatcatatatat |
25180041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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