View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_37 (Length: 233)
Name: NF18124_low_37
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 38943579 - 38943376
Alignment:
| Q |
14 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacgctcca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38943579 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacactcca |
38943480 |
T |
|
| Q |
114 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttcccatataatat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943479 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttcccatataatat |
38943380 |
T |
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| Q |
214 |
atat |
217 |
Q |
| |
|
|||| |
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| T |
38943379 |
atat |
38943376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 38951057 - 38950854
Alignment:
| Q |
14 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacgctcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38951057 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacactcca |
38950958 |
T |
|
| Q |
114 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttcccatataatat |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950957 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttcccatataatat |
38950858 |
T |
|
| Q |
214 |
atat |
217 |
Q |
| |
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|||| |
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|
| T |
38950857 |
atat |
38950854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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