View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_6 (Length: 491)
Name: NF18124_low_6
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 181 - 478
Target Start/End: Original strand, 21384696 - 21384993
Alignment:
| Q |
181 |
tatcatgtactgtagagtacaataattcatcttttttatttaaccaattaaaattccttgcaattttgtcgtatccaaataaggtaaatatatcacgcaa |
280 |
Q |
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| T |
21384696 |
tatcatgtactgtagagtactataattcttcttttttatttaaccaattaaaattccttgcaattttgtcgtatccaaataagttaaatatatcacgcaa |
21384795 |
T |
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| Q |
281 |
caaaattcaatgttgtgctggttcttataagaaacattcgtttaaattccaatcaaagctttttatgagaagtttaatgattgctaattggataaatttc |
380 |
Q |
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| T |
21384796 |
caaaattcaatgttgtgccggttcttataagaaacattcgtttaaattccaatcaaagctttttatgagaagtttaatgattgctaattggataaatttc |
21384895 |
T |
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| Q |
381 |
atatattcgttcgtaccattttcctttgagattttgagtcactttgagaatgggaactaagatgttgaaatttcaatgatgttacttcatggctaaag |
478 |
Q |
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| T |
21384896 |
atatattcgttcgtaccattttcctttgagattttgagtcacagtgagaatgggaactaagatgttgaaatttcaatgatgttacttcatggctaaag |
21384993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 21384439 - 21384595
Alignment:
| Q |
12 |
atgaatggttttaattctaatttgcacaatgtgacaaatattttgccccatgcaccttttcccaaccttagataaattggatacacgaataaaattgcat |
111 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||| ||| ||||| |||||||||||||||||| |
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| T |
21384439 |
atgaatggttttaattctaatttgcacaaagtgacaaatatgttgccccatgcaccttatctcaaccttaggtaatttggacacacgaataaaattgcat |
21384538 |
T |
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| Q |
112 |
cattttatcttaacgcaatattaattgtagcataatttagcttaagcaatataaatt |
168 |
Q |
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| T |
21384539 |
cattttatcttaacgcaatattaattgtagcatagtttagcttaagcaatataaatt |
21384595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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