View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18124_low_7 (Length: 476)
Name: NF18124_low_7
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18124_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 41000694 - 41000254
Alignment:
| Q |
18 |
gtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41000694 |
gtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaag |
41000595 |
T |
|
| Q |
118 |
agagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41000594 |
agagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatg |
41000495 |
T |
|
| Q |
218 |
cttgggatgaccttgtacaagaggtataataataataattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatat |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41000494 |
cttgggatgaccttgtacaagaggtataataa---taattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatat |
41000398 |
T |
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| Q |
318 |
atatagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaatnnnnnnncacaatcacttacaatcataac |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41000397 |
atttagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaataaaaaaacacaatcacttacaatcataac |
41000298 |
T |
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| Q |
418 |
agccattgattaaccaccctcatattgttctggccgaccatatt |
461 |
Q |
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| T |
41000297 |
agccattgattaaccaccctcatattgttctggccaaccatatt |
41000254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 20853033 - 20852593
Alignment:
| Q |
18 |
gtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20853033 |
gtttattcatggtgctaatgagagcacagccaatgcctacaagagacagttcaaaacagatttggcaagcttcttgagtgcaaggtcagtggaaatgaag |
20852934 |
T |
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| Q |
118 |
agagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatg |
217 |
Q |
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| T |
20852933 |
agagaggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatg |
20852834 |
T |
|
| Q |
218 |
cttgggatgaccttgtacaagaggtataataataataattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatat |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852833 |
cttgggatgaccttgtacaagaggtataataa---taattagaaacatttttatgcatgctttgtgttttttgaacagtagtcacttcacaatcacatat |
20852737 |
T |
|
| Q |
318 |
atatagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaatnnnnnnncacaatcacttacaatcataac |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20852736 |
atttagcctctatttacaattggcagaccaaaaaggagttgtagatagacactattgagataaatatcaataaaaaaacacaatcacttacaatcataac |
20852637 |
T |
|
| Q |
418 |
agccattgattaaccaccctcatattgttctggccgaccatatt |
461 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20852636 |
agccattgattaaccaccctcatattgttctggccaaccatatt |
20852593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 21556886 - 21556765
Alignment:
| Q |
122 |
aggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgcttg |
221 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||| | || |||||||||||||||||||||||||| |
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| T |
21556886 |
aggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacccactttcaggatgcttg |
21556787 |
T |
|
| Q |
222 |
ggatgaccttgtacaagaggta |
243 |
Q |
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|||||| ||||| ||||||||| |
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| T |
21556786 |
ggatgatcttgtccaagaggta |
21556765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 37129008 - 37128925
Alignment:
| Q |
56 |
acaagagacagttcaaaacagatttggcaa-gcttcttgagtgcaaggtcagtggaaatgaagagagaggggtccatgttctta |
138 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
37129008 |
acaagagacaattcaaaacagatttggcaaagcttcttgggtgcaaggtcaatggaaatgaagagagagggatccatgttctta |
37128925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 37128805 - 37128871
Alignment:
| Q |
279 |
ttgtgttttttgaacagtagtcacttcacaatcacatatatatagcctctatttacaattggcagaccaaa |
349 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
37128805 |
ttgtgttttttgaacagtagtcatttcacaatcac----atatagcctctatttacaattggcataccaaa |
37128871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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