View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18124_low_9 (Length: 475)

Name: NF18124_low_9
Description: NF18124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18124_low_9
NF18124_low_9
[»] chr1 (16 HSPs)
chr1 (282-459)||(4426144-4426315)
chr1 (6-146)||(4426452-4426588)
chr1 (283-352)||(50616034-50616103)
chr1 (283-352)||(50623862-50623931)
chr1 (289-351)||(26244471-26244533)
chr1 (289-351)||(33659951-33660013)
chr1 (289-351)||(28283760-28283822)
chr1 (286-347)||(37335065-37335126)
chr1 (283-323)||(28284587-28284627)
chr1 (293-352)||(47213883-47213942)
chr1 (292-351)||(10891705-10891764)
chr1 (309-348)||(33659394-33659433)
chr1 (286-323)||(3672568-3672605)
chr1 (283-316)||(37334504-37334537)
chr1 (293-349)||(45813229-45813284)
chr1 (293-353)||(52129986-52130046)
[»] chr5 (10 HSPs)
chr5 (282-351)||(38943650-38943719)
chr5 (283-352)||(37923478-37923547)
chr5 (283-351)||(19033104-19033172)
chr5 (283-351)||(2331443-2331511)
chr5 (289-348)||(38943090-38943149)
chr5 (283-346)||(2332316-2332379)
chr5 (287-351)||(19033648-19033712)
chr5 (293-351)||(10361047-10361105)
chr5 (293-331)||(33452199-33452237)
chr5 (287-316)||(37922735-37922764)
[»] chr7 (9 HSPs)
chr7 (283-351)||(28869836-28869904)
chr7 (283-351)||(47513543-47513611)
chr7 (283-353)||(44185794-44185864)
chr7 (287-351)||(7475025-7475089)
chr7 (289-348)||(28870408-28870467)
chr7 (283-323)||(7475969-7476009)
chr7 (287-323)||(47514427-47514463)
chr7 (293-351)||(18507758-18507816)
chr7 (293-331)||(36107008-36107046)
[»] chr4 (11 HSPs)
chr4 (283-351)||(33394459-33394527)
chr4 (289-351)||(33395005-33395067)
chr4 (287-351)||(29893905-29893969)
chr4 (283-346)||(40260572-40260635)
chr4 (282-351)||(29893343-29893412)
chr4 (283-352)||(48542374-48542443)
chr4 (287-352)||(50646619-50646684)
chr4 (283-349)||(43326030-43326096)
chr4 (282-352)||(50646057-50646125)
chr4 (290-351)||(48541396-48541457)
chr4 (289-349)||(44088057-44088117)
[»] scaffold0022 (2 HSPs)
scaffold0022 (283-351)||(60405-60473)
scaffold0022 (283-322)||(59805-59844)
[»] chr8 (6 HSPs)
chr8 (283-352)||(21570415-21570484)
chr8 (287-352)||(43139148-43139213)
chr8 (289-352)||(21570980-21571043)
chr8 (293-352)||(42840445-42840504)
chr8 (283-325)||(43139947-43139989)
chr8 (293-351)||(45376207-45376265)
[»] chr3 (19 HSPs)
chr3 (283-352)||(10029993-10030062)
chr3 (283-352)||(10181346-10181415)
chr3 (283-352)||(10257716-10257785)
chr3 (291-351)||(13647690-13647750)
chr3 (284-348)||(33464950-33465014)
chr3 (289-352)||(10030549-10030612)
chr3 (287-351)||(27042985-27043049)
chr3 (283-349)||(27043905-27043971)
chr3 (282-352)||(51801481-51801551)
chr3 (283-352)||(10124914-10124983)
chr3 (283-351)||(38506982-38507050)
chr3 (289-351)||(51800951-51801014)
chr3 (287-352)||(46416032-46416097)
chr3 (290-335)||(13648515-13648560)
chr3 (283-335)||(33464165-33464217)
chr3 (293-352)||(34266834-34266893)
chr3 (287-324)||(38507870-38507907)
chr3 (293-349)||(46961671-46961727)
chr3 (237-268)||(13647775-13647806)
[»] chr6 (5 HSPs)
chr6 (283-352)||(6608437-6608506)
chr6 (283-351)||(6607605-6607673)
chr6 (284-348)||(6606653-6606717)
chr6 (293-352)||(29429500-29429559)
chr6 (7-45)||(213659-213697)
[»] chr2 (8 HSPs)
chr2 (283-352)||(2283627-2283696)
chr2 (283-352)||(40129170-40129239)
chr2 (282-351)||(1156132-1156201)
chr2 (283-352)||(1156936-1157005)
chr2 (289-349)||(38825085-38825146)
chr2 (287-345)||(40133738-40133796)
chr2 (289-351)||(38825964-38826026)
chr2 (283-317)||(2285610-2285644)
[»] scaffold0072 (2 HSPs)
scaffold0072 (286-351)||(16237-16302)
scaffold0072 (284-348)||(17035-17099)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 9e-68; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 282 - 459
Target Start/End: Complemental strand, 4426315 - 4426144
Alignment:
Q  282 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcctctcaagttccaacctatttgggttgttat 381  Q
    ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  4426315 ttaatagcaaataaaacaaaattgatctaagatggagtaatttgtcaattgccctatgctaaaactcgcatctcaaattccaacctatttggattgttat 4426216  T
Q  382 gaataaattgactaaatttgatcattttatctttatctttatccgtacgcatcacgtattctattacaatgtttgaac 459  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||    
T  4426215 gaataaattgactaaatttgatcattttatctt------tatccgtacgcatcacgtattctattacaatgtttgaac 4426144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 4426588 - 4426452
Alignment:
Q  6 tggacatcatcatggcaagttattattatgaagtttctaacaatgatgatgatgggtttgattgttcccatagctcggatttaaactcaagatcgccata 105  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  4426588 tggacataaccatggcaagttattattatgaa-tttctaacaatgatgatg---ggtttgattgttcccatagctcggatttaaactcaagatcgccata 4426493  T
Q  106 attaaagcatttgagataaaatatgttggtgcctctagggc 146  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4426492 attaaagcatttgagataaaatatgttggtgcctctagggc 4426452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 50616034 - 50616103
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  50616034 taataccaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatactaaaactcgcct 50616103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 50623862 - 50623931
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  50623862 taataccaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatactaaaactcgcct 50623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 26244471 - 26244533
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  26244471 caaataaaacaaaattgatctaagatggggcaatttcacaattaccccatgctaaaactcgcc 26244533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 33659951 - 33660013
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  33659951 caaataaaacaaaattgatctaagattgggcaatttcacaattgccccatgctaaaactcgcc 33660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 28283822 - 28283760
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  28283822 caaataaaataaaattgatctaagatgggacaatttcacaattgccccatgctaaaactcgcc 28283760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 37335065 - 37335126
Alignment:
Q  286 tagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaact 347  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  37335065 tagcaaataaaacaaaattgatctaagatggagcaatttgagaattgccccatgctgaaact 37335126  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 28284587 - 28284627
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatt 323  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28284587 taatagcaaataaaacaaaattgatctaagatggggcaatt 28284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 47213942 - 47213883
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||| |||||||| | ||||||||||||  || ||||||||||||||||    
T  47213942 taaaacaaaattgatataagatggagaaatttgacaatttacccatgctaaaactcgcct 47213883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 10891705 - 10891764
Alignment:
Q  292 ataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||| |||||||||||||||||||||| |||||  | ||||||| |||||||||| ||||    
T  10891705 ataagacaaaattgatctaagatggggaaatttttccattgccccatgctaaaacccgcc 10891764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 33659433 - 33659394
Alignment:
Q  309 taagatggggcaatttgacaattgccctatgctaaaactc 348  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  33659433 taagatggagcaatttaacaattgccctatgctaaaactc 33659394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 3672605 - 3672568
Alignment:
Q  286 tagcaaataaaacaaaattgatctaagatggggcaatt 323  Q
    |||||||||||||||||||||||||||| || ||||||    
T  3672605 tagcaaataaaacaaaattgatctaagagggagcaatt 3672568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 37334537 - 37334504
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatgg 316  Q
    ||||| ||||||||||||||||||||||||||||    
T  37334537 taataccaaataaaacaaaattgatctaagatgg 37334504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 45813229 - 45813284
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcg 349  Q
    |||||||||||||||||||||| ||  ||||||||||||  || |||||||||||||    
T  45813229 taaaacaaaattgatctaagat-ggaaaatttgacaatttacccatgctaaaactcg 45813284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 52129986 - 52130046
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcctc 353  Q
    |||||||||||||||||||||||||  ||||||| ||||  || || |||||||| |||||    
T  52129986 taaaacaaaattgatctaagatgggaaaatttgataatttgcccatactaaaacttgcctc 52130046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 38943650 - 38943719
Alignment:
Q  282 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38943650 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactcgcc 38943719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 37923478 - 37923547
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  37923478 taatagcaaataaaacaaaattgatctaagatggggaaatttgacaattgccccatgctaaaactcgcct 37923547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 19033172 - 19033104
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  19033172 taatagcaaataaaacaaaattgatctaagatggggcagtttgacaattgccccttgctaaaactcgcc 19033104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 2331511 - 2331443
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  2331511 taatagcaaataaaataaaattgatctaagttggggcaatttcacaattgccccatgctaaaactcgcc 2331443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 38943149 - 38943090
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactc 348  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  38943149 caaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaactc 38943090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 2332316 - 2332379
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaac 346  Q
    ||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||    
T  2332316 taatagcaaataaaacaaaattgatttaagatggagcaatttaacaattgccccatgctaaaac 2332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 19033648 - 19033712
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||| | |||||||||||||||    
T  19033648 agcaaataaaataaaattgatctaagatgggacaatttcacaattgctccatgctaaaactcgcc 19033712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 10361047 - 10361105
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||    
T  10361047 taaaacaaaattgatctaagatgggaaaatttgacaatttgcccatgctaaaactcgcc 10361105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 33452199 - 33452237
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaatt 331  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  33452199 taaaacaaaattgatctaagatggtgaaatttgacaatt 33452237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 316
Target Start/End: Complemental strand, 37922764 - 37922735
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatgg 316  Q
    ||||||||||||||||||||||||||||||    
T  37922764 agcaaataaaacaaaattgatctaagatgg 37922735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 28869904 - 28869836
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28869904 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactcgcc 28869836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 47513611 - 47513543
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47513611 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactcgcc 47513543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 44185794 - 44185864
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcctc 353  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  44185794 taataacaaataaaataaaattgatctaagatgggacaatttgacaattgccccatgctaaaactcgcctc 44185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 7475089 - 7475025
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||| ||||||||||||| ||||| | |||||||| |||||||||||||||    
T  7475089 agcaaataaaacaaaattaatctaagatggggtaatttcataattgccccatgctaaaactcgcc 7475025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 28870408 - 28870467
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactc 348  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||    
T  28870408 caaataaaacaaaattgatctaagatggagcaatttcacaattaccccatgctaaaactc 28870467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 7475969 - 7476009
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatt 323  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7475969 taatagcaaataaaataaaattgatctaagatggggcaatt 7476009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 47514427 - 47514463
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatt 323  Q
    |||||||||||||||||||||||||||||||||||||    
T  47514427 agcaaataaaacaaaattgatctaagatggggcaatt 47514463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 18507816 - 18507758
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||| || |||||||||  |||||| ||||||||||||| |||||||||||    
T  18507816 taaaacaaaatttatttaagatgggaaaatttggcaattgccctatgttaaaactcgcc 18507758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 36107008 - 36107046
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaatt 331  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  36107008 taaaacaaaattgatctaagatgggaaaatttgacaatt 36107046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 33394527 - 33394459
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33394527 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactcgcc 33394459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 33395005 - 33395067
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  33395005 caaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcgcc 33395067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 29893905 - 29893969
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29893905 agcaaataaaataaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcgcc 29893969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 40260635 - 40260572
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaac 346  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  40260635 taatagtaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaac 40260572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 29893412 - 29893343
Alignment:
Q  282 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||    
T  29893412 ttaataacaaataaaacaaaattgatctaagatggagcaatttgacaattgtcccatactaaaactcgcc 29893343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 48542374 - 48542443
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||| |||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||    
T  48542374 taatagcaaataaaataaaattgatctaagatggagcagtttcacaattgccccatgctaaaactcgcct 48542443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 50646619 - 50646684
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  50646619 agcaaataaaacaaaattgatttaagatggagcaatttcacaattgccccatgctaaaactcgcct 50646684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 43326030 - 43326096
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcg 349  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||| || |||||||||||||    
T  43326030 taatagcaaataaaacaaaattgatttaagatgggacagtttgacaattgtcccatgctaaaactcg 43326096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 50646125 - 50646057
Alignment:
Q  282 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||| |||||||||||  ||||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  50646125 ttaatagtaaataaaacaa--ttgatttaagatggggcaatttgacaattgctccatgctaaaactcgcct 50646057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 48541457 - 48541396
Alignment:
Q  290 aaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||| |||| ||||||||||||||  || |||||||||||||||    
T  48541457 aaataaaacaaaattgatctaatatggagcaatttgacaattaacccatgctaaaactcgcc 48541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 44088057 - 44088117
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcg 349  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||| ||| |||||||||    
T  44088057 caaataaaacaaaattgttctaagatgaagcaatttgacaattgccccatgttaaaactcg 44088117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 60405 - 60473
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  60405 taatagcaaataaaacaaaattgatctaagatggagcaatttgacaattgccccatgctaaaactcgcc 60473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 59844 - 59805
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaat 322  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  59844 taataccaaataaaacaaaattgatctaagatgggacaat 59805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 21570484 - 21570415
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  21570484 taatagcaaataaaacaaaattgatctaagattgggcaatttgacaattgccccatactaaaactcgcct 21570415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 43139213 - 43139148
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  43139213 agcaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcgcct 43139148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 21570980 - 21571043
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||||||||||| || ||||||||| |||| ||||| ||||||||||||||||    
T  21570980 caaataaaacaaaattgatctaaaatagggcaatttcacaaatgccccatgctaaaactcgcct 21571043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 42840504 - 42840445
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||| | ||||||||||||  || ||||||||||||||||    
T  42840504 taaaacaaaattgatctaagatggagaaatttgacaatttgcccatgctaaaactcgcct 42840445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 43139947 - 43139989
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttg 325  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  43139947 taatagcaaataaaataaaattgatctaagatggggcaatttg 43139989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 45376207 - 45376265
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||| ||||||| ||||  || || ||||||||||||    
T  45376207 taaaacaaaattgatctaagatggggaaatttgataatttgcccatactaaaactcgcc 45376265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 10030062 - 10029993
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  10030062 taatagcaaataaaacaaaattgatctaagatagagcaatttgacaattgccccatgctaaaactcgcct 10029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 10181415 - 10181346
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  10181415 taatagtaaataaaacaaaattgatctaagatggagcaatttgacaactgccccatgctaaaactcgcct 10181346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 10257785 - 10257716
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  10257785 taatagcaaataaaacaaaattgatctaagatagagcaatttgacaattgcctcatgctaaaactcgcct 10257716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 13647750 - 13647690
Alignment:
Q  291 aataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  13647750 aataaaacaaaattgatctaagatggggcaatttgacaattgccccatgttaaaactcgcc 13647690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 33464950 - 33465014
Alignment:
Q  284 aatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactc 348  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33464950 aatagcaaataaaataaaattgatctaagttggggcaatttgacaattgccccatgctaaaactc 33465014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 10030549 - 10030612
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  10030549 caaataaaacaaaattgatctaagatggggcaatttcacaattgtcccatgctaaaactcgcct 10030612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 27043049 - 27042985
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||||||    
T  27043049 agcaaataaaacaaaattgatttaagatggagcaatttcacaattgccccatgctaaaactcgcc 27042985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 27043905 - 27043971
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcg 349  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||| ||||    
T  27043905 taatagcaaataaaacaaaattgatctaagatagggcaatttgacaattaccccatactaaatctcg 27043971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 51801481 - 51801551
Alignment:
Q  282 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||| |||||||||||||||||||||||||| | | ||||||||||||| || ||||||||||||||||    
T  51801481 ttaataacaaataaaacaaaattgatctaagattgagtaatttgacaattgtcccatgctaaaactcgcct 51801551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 10124983 - 10124914
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||| ||||||||||||| || || ||||||||||||||||| |||| |||||||||||    
T  10124983 taatagcaaataaaataaaattgatctaaaataggacaatttgacaattgcccaatgccaaaactcgcct 10124914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 38507050 - 38506982
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||||||||||||||| |||||||||||||    |||||||| |||||||||||||||    
T  38507050 taatagcaaataaaacaaaattgatcttagatggggcaattgtcaaattgccccatgctaaaactcgcc 38506982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 51801014 - 51800951
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaa-ttgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||  |||||||||||||||    
T  51801014 caaataaaacaaaattgatctaagatggggcaatttcacaatttgcctcatgctaaaactcgcc 51800951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 46416097 - 46416032
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatt-tgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||    
T  46416097 agcaaataaaacaaaattgatttaagatggggcaattgtga-aattgccccatgctaaaactcgcct 46416032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 13648515 - 13648560
Alignment:
Q  290 aaataaaacaaaattgatctaagatggggcaatttgacaattgccc 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13648515 aaataaaacaaaattgatctaagatggggcaatttcacaattgccc 13648560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 33464217 - 33464165
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccc 335  Q
    ||||||||||||||||||||||||| |||||||||||||||| || |||||||    
T  33464217 taatagcaaataaaacaaaattgatttaagatggggcaatttaacgattgccc 33464165  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 34266893 - 34266834
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||| ||||||||||||  || ||||||||||| ||||    
T  34266893 taaaacaaaattgatctaagatggggaaatttgacaatttgcccatgctaaaacttgcct 34266834  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 38507870 - 38507907
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaattt 324  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38507870 agcaaataaaacaaaattgatctaagatggggcaattt 38507907  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 46961671 - 46961727
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcg 349  Q
    ||||| |||||||||||||||||||  ||||||||||||  || |||||||||||||    
T  46961671 taaaataaaattgatctaagatgggaaaatttgacaattcacccatgctaaaactcg 46961727  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 13647806 - 13647775
Alignment:
Q  237 tgcagggtggacaactaatagcaaattttgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  13647806 tgcagggtggacaactaatagcaaattttgtc 13647775  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 6608437 - 6608506
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||    
T  6608437 taatagcaaataaaacaaaattgatctaagatggggcaatttaacaattgtcccatgctaaaacccgcct 6608506  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 6607673 - 6607605
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  6607673 taatagcaaataaaataaaattgatctaagttggggcaatttcacaattgccccatgctaaaactcgcc 6607605  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 6606717 - 6606653
Alignment:
Q  284 aatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactc 348  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  6606717 aataacaaataaaacaaaattgatctaagttggggcaatttcacaattgccccatgctaaaactc 6606653  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 29429500 - 29429559
Alignment:
Q  293 taaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||| ||||||||||||  |  ||||||||||||||||    
T  29429500 taaaacaaaattgatctaagatggggaaatttgacaatttgctcatgctaaaactcgcct 29429559  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 213659 - 213697
Alignment:
Q  7 ggacatcatcatggcaagttattattatgaagtttctaa 45  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  213659 ggacatcaccatgacaagttattattatgaagtttctaa 213697  T

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Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 2283696 - 2283627
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||    
T  2283696 taatagcaaataaaacaaaattgatctaagttggggcaatttcacaattgctccatgctaaaactcgcct 2283627  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 40129239 - 40129170
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| |||||    
T  40129239 taatagcaaataaaagaaaattgatctaagatggagcaatttgacaattaccccatgctaaaacacgcct 40129170  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 1156201 - 1156132
Alignment:
Q  282 ttaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||| ||||||||  |||||| |||||||||| |||||||||| ||||    
T  1156201 ttaatagcaaataaaacaaaattgatttaagatggaacaatttaacaattgccccatgctaaaacccgcc 1156132  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 1156936 - 1157005
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcct 352  Q
    |||||||||||||||||||||||||||||| ||||  ||||| ||||||| || ||||||||||||||||    
T  1156936 taatagcaaataaaacaaaattgatctaagttgggataatttcacaattgtcccatgctaaaactcgcct 1157005  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 38825146 - 38825085
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaa-tttgacaattgccctatgctaaaactcg 349  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||||    
T  38825146 caaataaaacaaaattgatttaagatggggcaattttgacaattactctatgctaaaactcg 38825085  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 40133738 - 40133796
Alignment:
Q  287 agcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaa 345  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||||  ||||||||    
T  40133738 agcaaataaaacaaaattgatttaagatggggcaatttcacaactgccccgtgctaaaa 40133796  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 38825964 - 38826026
Alignment:
Q  289 caaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||| ||||||||||  ||||||| ||||| |||| |||| ||||||||||    
T  38825964 caaataaaacaaaatttatctaagatgaagcaatttcacaatcgccccatgcaaaaactcgcc 38826026  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 2285610 - 2285644
Alignment:
Q  283 taatagcaaataaaacaaaattgatctaagatggg 317  Q
    ||||||||||||||||||||||||| |||||||||    
T  2285610 taatagcaaataaaacaaaattgatttaagatggg 2285644  T

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Target: scaffold0072 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 16302 - 16237
Alignment:
Q  286 tagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactcgcc 351  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||||| ||||    
T  16302 tagcaaataaaacaaaattgatctaagatggaccaatttaacaattgtcctatgctaaaacccgcc 16237  T

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Target: scaffold0072; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 17035 - 17099
Alignment:
Q  284 aatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccctatgctaaaactc 348  Q
    |||| |||||||||||||||||||||||| || |||||||| ||||||| || ||||||||||||    
T  17035 aataacaaataaaacaaaattgatctaagttgaggcaatttcacaattgtcccatgctaaaactc 17099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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