View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18125_high_10 (Length: 359)
Name: NF18125_high_10
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 2435963 - 2435633
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435963 |
agattgtactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
2435864 |
T |
|
| Q |
112 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatcccatagttattagtgtctcatattaccaagaaattctaactgactactgaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435863 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatcccatagttattagtgtctcatattaccaagaaattctaactgactactgaca |
2435764 |
T |
|
| Q |
212 |
cgatacggatacatacatacgagtactaatttagaaaaatagaagtgattgtatacaatcacgagtgacaatgttgtgttggtgtcagacatcaacgctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435763 |
cgatacggatacatacatacgagtactaatttagaaaaatagaagtgattgtatacaatcacgagtgacaatgttgtgttggtgtcagacatcaacgctt |
2435664 |
T |
|
| Q |
312 |
ctctgactcgccttcaatttgaagtgttgct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2435663 |
ctctgactcgccttcaatttgaagtgttgct |
2435633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 2516392 - 2516540
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
2516392 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcaagagtacagcatcaagtgtctttcccccaacattctcaaagt |
2516491 |
T |
|
| Q |
112 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatcc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2516492 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatcc |
2516540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 2432602 - 2432455
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||| || || |||||||||||||||| |
|
|
| T |
2432602 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
2432503 |
T |
|
| Q |
112 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
2432502 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatc |
2432455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 2429620 - 2429457
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| || ||||||| | |||||||||| ||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
2429620 |
agattgtactgtgagatcattccacacacaggtatccgcccatggagtttcatattcaagagtacagcatcaagtgtctttccccccacattctcaaagt |
2429521 |
T |
|
| Q |
112 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatcccatagttattagtgt |
175 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
2429520 |
aaatgtcaatgccttctggaaagtatctagtttacataaattgatatctactagttattagtgt |
2429457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 2496819 - 2496934
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||| ||||||||||| ||||| ||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
2496819 |
agattgtactgtgagatcattccacatgcaggtatgcggccgtggactctcatgttcaagagtacagcatcaagtgtcttgcctccaacattctcaaagt |
2496918 |
T |
|
| Q |
112 |
aaatgtcaatgccttc |
127 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
2496919 |
aaatatcaatgccttc |
2496934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 2505500 - 2505645
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| || || | |||||| ||||| ||||| ||||||||||| || ||||| || |||||||||| |
|
|
| T |
2505500 |
agattgtactgtgagatcattccacacacaggtatgcgaccttgtaatctcatgttcaagagtacggcatcaagtgtcttgccaccgacgttctcaaagt |
2505599 |
T |
|
| Q |
112 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgata |
157 |
Q |
| |
|
||| ||||||||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
2505600 |
aaacatcaatgccttctggaaagtgcctgattcacataaaatgata |
2505645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 2512121 - 2512269
Alignment:
| Q |
12 |
agattatactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
111 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||| | | |||| ||||| ||||| ||||||||||| || || ||||| |||||||||| |
|
|
| T |
2512121 |
agattgtactgtgagatcattccacacacaggtatgcgaccatgtagtttcatgttcaagagtacggcatcaagtgtcttgcctccaacgttctcaaagt |
2512220 |
T |
|
| Q |
112 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatcc |
160 |
Q |
| |
|
||| |||||| ||||||||||||| ||| || | | |||||||||||| |
|
|
| T |
2512221 |
aaacgtcaattccttctggaaagtgcctgatttccccaaattgatatcc |
2512269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 2429403 - 2429322
Alignment:
| Q |
219 |
gatacatacatacgagtactaatttagaaaaatagaagtgattgtatacaatcacgagtgacaatgttgtgttggtgtcaga |
300 |
Q |
| |
|
|||| ||||| |||| || |||||| ||||||||||||||| ||||| ||||||| || ||| |||| ||||||||||||| |
|
|
| T |
2429403 |
gataaatacacacgaataataatttggaaaaatagaagtgagtgtatgcaatcacaagagacgctgttatgttggtgtcaga |
2429322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 41540512 - 41540465
Alignment:
| Q |
93 |
ccaccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
140 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
41540512 |
ccaccaacattgtcaaagtatatgtcaattccttcgggaaagtaccta |
41540465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University