View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18125_high_2 (Length: 612)
Name: NF18125_high_2
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_high_2 |
 | |
|
| [»] scaffold0087 (6 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 5888416 - 5889011
Alignment:
| Q |
1 |
aaattaacataaccactaatttactaacagttaacagaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888416 |
aaattaacataaccactaatttactaacagttaacagaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttcc |
5888515 |
T |
|
| Q |
101 |
acggcacataaggatttatacagaaaatatctgataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
5888516 |
acggcacataaggatttatacagaaaatatctgataaagtagttcagtaaaaacataagatgatcataactcataagagataaatgtagtaaaacagaac |
5888615 |
T |
|
| Q |
201 |
acaaagaatactcttggatgcaacatgcatgttccaaatagaacatttattgaggagacactgcgacatatcactctctcatatgaagaagatttaccta |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888616 |
ataaagaatactcttggatgcaacatgcatgttccaaatagaacatttattgaggagacactgcgacatatcactctctcatatgaagaagatttaccta |
5888715 |
T |
|
| Q |
301 |
caaataaaggaaaaataatatttcatctcacctgatattcagtgtgtacaaattacaaatgtcaataagggatcaataaggaatttacctgttagtcttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888716 |
caaataaaggaaaaataatatttcatctcacctgatattcagtgtgtacaaattacaaatgtcaataagggatcaataaggaatttacctgttagtcttg |
5888815 |
T |
|
| Q |
401 |
gactaggaaattatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccat |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888816 |
gacttggaaattatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccat |
5888915 |
T |
|
| Q |
501 |
gatgtttttatcacaagagttccacaaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5888916 |
gatgttttaatcacaagagttccacaaactccccaaaatccaattatgaaaccaagtaccaaggtaacataaaacccaaaggttatgagtttatct |
5889011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5765307 - 5765533
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5765307 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5765406 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5765407 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5765503 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5765504 |
tccaaaatagaacatttattgaggagacac |
5765533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5768842 - 5769068
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5768842 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5768941 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5768942 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5769038 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5769039 |
tccaaaatagaacatttattgaggagacac |
5769068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5772377 - 5772603
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5772377 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5772476 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5772477 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5772573 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5772574 |
tccaaaatagaacatttattgaggagacac |
5772603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5775912 - 5776138
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5775912 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5776011 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5776012 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5776108 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5776109 |
tccaaaatagaacatttattgaggagacac |
5776138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5779447 - 5779673
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5779447 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5779546 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5779547 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5779643 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5779644 |
tccaaaatagaacatttattgaggagacac |
5779673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5782982 - 5783208
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5782982 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5783081 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5783082 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5783178 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5783179 |
tccaaaatagaacatttattgaggagacac |
5783208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5786517 - 5786743
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5786517 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5786616 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5786617 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5786713 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5786714 |
tccaaaatagaacatttattgaggagacac |
5786743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5790052 - 5790278
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5790052 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5790151 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5790152 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5790248 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5790249 |
tccaaaatagaacatttattgaggagacac |
5790278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5793587 - 5793813
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5793587 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5793686 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5793687 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5793783 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5793784 |
tccaaaatagaacatttattgaggagacac |
5793813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5797122 - 5797348
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5797122 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5797221 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5797222 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5797318 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5797319 |
tccaaaatagaacatttattgaggagacac |
5797348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5800657 - 5800883
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5800657 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5800756 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5800757 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5800853 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5800854 |
tccaaaatagaacatttattgaggagacac |
5800883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5804192 - 5804418
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5804192 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5804291 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5804292 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5804388 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5804389 |
tccaaaatagaacatttattgaggagacac |
5804418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5807727 - 5807953
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5807727 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5807826 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5807827 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5807923 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5807924 |
tccaaaatagaacatttattgaggagacac |
5807953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5811262 - 5811488
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5811262 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5811361 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5811362 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5811458 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5811459 |
tccaaaatagaacatttattgaggagacac |
5811488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5814797 - 5815023
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5814797 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5814896 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5814897 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5814993 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5814994 |
tccaaaatagaacatttattgaggagacac |
5815023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 5818332 - 5818558
Alignment:
| Q |
36 |
agaattaatataacaaaaatagaattaaaagacacagaaaatatgcatagacataacatttttccacggcacataaggatttatacagaa---aatatct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| ||||| |||| | | ||||| |
|
|
| T |
5818332 |
agaattaatataacaaaaatagaattaaaagaaacagaaaatattcatatacataacttctttccagggcacataaatatttaaacagcaattactatct |
5818431 |
T |
|
| Q |
133 |
gataaagtagttcagtaaaaacataagatgatgataactcataagagattaatgtagtaaaacagaacacaaagaatactcttggatgcaacatgcatgt |
232 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||||| ||| |||||||| |||||||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
5818432 |
gataatgtagtttagtaagaacttaagatgatg---actaataagagaataatgtagcaaaagagtacccaaagaatactcttggatgcaacatgcatgc |
5818528 |
T |
|
| Q |
233 |
tcc-aaatagaacatttattgaggagacac |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
5818529 |
tccaaaatagaacatttattgaggagacac |
5818558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 383 - 596
Target Start/End: Complemental strand, 5884412 - 5884198
Alignment:
| Q |
383 |
atttacctgttagtcttggactaggaa-attatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattg |
481 |
Q |
| |
|
|||||||||||||||||||||| | || ||| ||||| ||| | || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
5884412 |
atttacctgttagtcttggacttgaaatattttttttcaacctcttcataaaaactgccagtgtgacatggatccaatcattcatgttcttgaagaattt |
5884313 |
T |
|
| Q |
482 |
gaaatagacatgtctccatgatgtttttatcacaagagttccacaaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaag |
581 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || || |||||||||||||||||| |
|
|
| T |
5884312 |
aaaataggcatgcctccatgatgtttttatcactagagttccacaaactccccaaaatccaacaaaaaaaccaagccctaaggtaacataaaacccaaag |
5884213 |
T |
|
| Q |
582 |
gttatgagtttatct |
596 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
5884212 |
gttatgagcttatct |
5884198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 376 - 596
Target Start/End: Complemental strand, 5854260 - 5854040
Alignment:
| Q |
376 |
ataaggaatttacctgttagtcttggactaggaaattatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaa |
475 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||| | || || ||| | |||| ||||||||||||||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
5854260 |
ataaggaatttacctgctagtcttctacttggaatctcttcttcaacctatttacaaaaactgctagtgtgatatggatccaatcattcatgttgttgaa |
5854161 |
T |
|
| Q |
476 |
aaattggaaatagacatgtctccatgatgtttttatcacaagagttccacaaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaac |
575 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| | |||| ||||||||||| |
|
|
| T |
5854160 |
gaatttgaaataggcatgtctccatgatgtttttatcactagacttccacaaactccccaaaatccaattatgaaaccaagtaccaagctaacataaaac |
5854061 |
T |
|
| Q |
576 |
ccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
5854060 |
ccaaaggttatgagcttatct |
5854040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 426 - 595
Target Start/End: Complemental strand, 5821934 - 5821765
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| |||||||| |||||| ||||| ||||||||||||| ||| ||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5821934 |
tttacaaaaactgatagtgtgacatggatccaatcattcaagttgttgaagaatttgaaataggcatgcctccatgatgtttttatcacaagagttccac |
5821835 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatc |
595 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||||||||| ||||| || ||||| |
|
|
| T |
5821834 |
aaactccccaaaatccaacaaaaaaaccaatcaccaagctaacataaaacccaaatgttattagcttatc |
5821765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 596
Target Start/End: Complemental strand, 5831269 - 5831099
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| |||||||||||| || |||| |||||||| |||||||| ||||| |||| ||||||| || | |||||||||||||| |||||||||||||||| |
|
|
| T |
5831269 |
tttacaaaaactgctagagtgacatagatccaatctttcatgttgttgaagaatttgaaataggcacgcctccatgatgttttaatcacaagagttccac |
5831170 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||||||||||||||||| |||| | |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5831169 |
aaactccccaaaatccaattatgaaaccaagtaccaagctaacataaaacccaaaggttatgagcttatct |
5831099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 596
Target Start/End: Complemental strand, 5881652 - 5881482
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| |||||||| |||| | ||||| ||||||||||||| ||| ||||| |||| ||||||| |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
5881652 |
tttacaaaaactgatagtatgacatggatccaatcattcaagttgttgaagaatttgaaataggcatgcctccatgacgtttttatcacaagagttccac |
5881553 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
5881552 |
aaactccccaaaagccaacaaaaaaaccaatcaccaagctaacataaaacccaatggttatgagcttatct |
5881482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 453 - 596
Target Start/End: Complemental strand, 5762340 - 5762197
Alignment:
| Q |
453 |
atccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccacaaactccccaaaatccaacnnnnnnnc |
552 |
Q |
| |
|
||||||||||| ||||| ||||| |||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
5762340 |
atccaatcatttatgttgttgaagaatttgaaataggcatgcctccatgatgtttttatcactagagttccacaaactccccaaaatccaatgaaaaaac |
5762241 |
T |
|
| Q |
553 |
caattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5762240 |
caatcaccaagctaacataaaacccaaaggttatgagcttatct |
5762197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 378 - 543
Target Start/End: Complemental strand, 5886313 - 5886148
Alignment:
| Q |
378 |
aaggaatttacctgttagtcttggactaggaaattatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaa |
477 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| | || || ||| | || | | ||||||||||||| ||||| ||||||||||||||||| |||| | |
|
|
| T |
5886313 |
aaggaatttaccagttaatcttggacttggaatctcttcttcaacctattcacagaaactgctagtgtgacatggatccaatcattcatgttgttgagta |
5886214 |
T |
|
| Q |
478 |
attggaaatagacatgtctccatgatgtttttatcacaagagttccacaaactccccaaaatccaa |
543 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||||||||| ||| |||||| ||||||||||| ||||| |
|
|
| T |
5886213 |
atttgaaataggcatgtctacatgatgtttttatcactagacttccaccaactccccaaagtccaa |
5886148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 5831511 - 5831432
Alignment:
| Q |
202 |
caaagaatactcttggatgcaacatgcatgttccaaatagaacatttattga-ggagacactgcgacatatcactctctc |
280 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||| | |||||| |||||| | ||||| || |||||||||||||||| |
|
|
| T |
5831511 |
caaaaaatactcttggatgaacaatgcatgttccaattggaacatatattgatgaagacattgtgacatatcactctctc |
5831432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 426 - 596
Target Start/End: Complemental strand, 13933 - 13763
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| ||||||| || |||| ||||| ||||||||||| ||||| ||||| |||| ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
13933 |
tttacaaaaacttcttgtgtgacatggatccaatcatttatgttgttgaagaatttgaaataggcatgcctccatgatgtttttatcactagagttccac |
13834 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
13833 |
aaactccccaaaatccaatgaaaaaaccaatcaccaagctaacataaaacccaaaggttatgagcttatct |
13763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 426 - 596
Target Start/End: Complemental strand, 41379 - 41209
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| |||||| | |||||||||||| ||||||||||||| ||| ||||| || | ||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
41379 |
tttacaaaaaccgatagtgtaacatggatccaatcattcaagttgttgaagaacttgaaataggcatgtctccacgatgtttttatcactagagttccac |
41280 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
41279 |
aaactccccaaaatccaacaaaaaaaccaatcaccaagctaacataaaacccaatggttatgagcttatct |
41209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 596
Target Start/End: Complemental strand, 20998 - 20828
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| ||||||| ||||||| ||||| ||||| ||||| ||||| ||||| |||| ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
20998 |
tttacaaaaacttctagtgtgacatggatccattcatttatgtttttgaagaatttgaaataggcatgcctccatgatgtttttatcactagagttccac |
20899 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
20898 |
aaactccccaaaatccaattagaaatccaagccccaagctaacataaaacccaaaggttattagcttatct |
20828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 426 - 596
Target Start/End: Complemental strand, 35338 - 35168
Alignment:
| Q |
426 |
tttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaaaaattggaaatagacatgtctccatgatgtttttatcacaagagttccac |
525 |
Q |
| |
|
|||| |||||||||||| || |||| |||||||| |||||||| ||||| |||| ||||||| || | |||||||||||||| |||||||||||||||| |
|
|
| T |
35338 |
tttacaaaaactgctagagtgacatagatccaatctttcatgttgttgaagaatttgaaataggcacgcctccatgatgttttaatcacaagagttccac |
35239 |
T |
|
| Q |
526 |
aaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaacccaaaggttatgagtttatct |
596 |
Q |
| |
|
|||||||||||||||||| |||| | |||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
35238 |
aaactccccaaaatccaattatgaaaccaagtaccaagctaacataaaacccaaatgttatgagcttatct |
35168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 376 - 596
Target Start/End: Complemental strand, 31396 - 31176
Alignment:
| Q |
376 |
ataaggaatttacctgttagtcttggactaggaaattatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcattcatgttcttgaa |
475 |
Q |
| |
|
||||| |||||||| |||| |||||||| |||| || || || || | |||| |||||| |||||||| ||||| ||||| ||||||| ||| ||||| |
|
|
| T |
31396 |
ataagaaatttaccagttaatcttggacatggaatttcttattcaaactatttacaaaaacagctagtgtgacatggatccagtcattcacgttgttgaa |
31297 |
T |
|
| Q |
476 |
aaattggaaatagacatgtctccatgatgtttttatcacaagagttccacaaactccccaaaatccaacnnnnnnnccaattcccaaagtaacataaaac |
575 |
Q |
| |
|
|||| ||| ||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
31296 |
gaatttgaagtaggcatgtctccatgacgtttttagcactagagttccacaaactccccaaaatccaattataaatccaagccccaagctaacataaaac |
31197 |
T |
|
| Q |
576 |
ccaaaggttatgagtttatct |
596 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
31196 |
ccaaaggttattagcttatct |
31176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 35581 - 35501
Alignment:
| Q |
202 |
caaagaatactcttggatgcaacatgcatgttccaaatagaacatttattga-ggagacactgcgacatatcactctctca |
281 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||| | |||||| |||||| | ||||| || ||||||||||||||||| |
|
|
| T |
35581 |
caaaaaatactcttggatgaacaatgcatgttccaattggaacatatattgatgaagacattgtgacatatcactctctca |
35501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 463
Target Start/End: Original strand, 172773 - 172860
Alignment:
| Q |
376 |
ataaggaatttacctgttagtcttggactaggaaattatttttgaacttgtttataaaaactgctagtgtaacatgaatccaatcatt |
463 |
Q |
| |
|
||||| |||||||| |||| |||| |||| |||| | ||||| ||| | |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
172773 |
ataagaaatttaccagttattcttcgacttggaatctctttttcaacctatttacaaaaactgctagtgtggcatgaatccaatcatt |
172860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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