View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_high_4 (Length: 512)
Name: NF18125_high_4
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 51727908 - 51728384
Alignment:
| Q |
1 |
agctcgtgaacaatgtatcttcgagtagatatgtatttttactatttttgacaaagctcgtgaacagcatttgtcctctaagcttggatttctagacaaa |
100 |
Q |
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| T |
51727908 |
agctcgtgaacaatgtatcttggagtagatatgtatttttactatttttgacaaagctcgtgaacagcatttgtcctctaagctaggatttctagacaaa |
51728007 |
T |
|
| Q |
101 |
tcgatgtagatttgttaaacttggatatttatttattttttactaaaaaccgaaccattaaattaaactccctgtccaagtaatggatatggaaggatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |
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| T |
51728008 |
tcgatgtagatttgttaaacttggatatttatttattttttactaaaaaccgaaccattaaa-----ccccctgtccaagtaatggatatggagggatta |
51728102 |
T |
|
| Q |
201 |
actgtgaaccaaaatgaatgatagagtagagttgaggtaaatatagaaaattgatgacagtagtacattgaatttaacacacgtaggtgagaaagnnnnn |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
51728103 |
actgtgaaccaaaatgaatgatagaga-----tgaggtaaatatagaaaattga---cagtagtacattgaatttaacacacgtaggttagaaa-----a |
51728189 |
T |
|
| Q |
301 |
nnnnnntggttggaattccaaccaaaatgggacatgcaattggagattggttcaacccacactatgcattctcaattccaattttgttacattctcataa |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728190 |
aaaaattcgttggaattccaaccaaaatgggacatgcaattggagattggttcaacccacactatgcattctcaattccaattttgttacattctcataa |
51728289 |
T |
|
| Q |
401 |
taattagaatagaaccccttccagattttcattttttcctttcagaatttctaatcaaattcattattgctgagttttgttcgaatgttgaatct |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728290 |
taattagaatagaaccccttccagattttcattttttcctttcataatttctaatcaaattcattattgctgagttttgttcgaatgttgaatct |
51728384 |
T |
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