View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18125_low_10 (Length: 411)

Name: NF18125_low_10
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18125_low_10
NF18125_low_10
[»] chr1 (5 HSPs)
chr1 (14-397)||(40643389-40643769)
chr1 (9-166)||(40652287-40652444)
chr1 (9-152)||(40642441-40642584)
chr1 (262-320)||(35594870-35594928)
chr1 (344-397)||(35594823-35594876)
[»] chr3 (1 HSPs)
chr3 (218-305)||(535230-535317)
[»] chr4 (2 HSPs)
chr4 (262-320)||(1834497-1834555)
chr4 (344-397)||(1834549-1834602)
[»] chr5 (2 HSPs)
chr5 (261-318)||(25055785-25055842)
chr5 (344-397)||(25055838-25055891)
[»] scaffold1303 (2 HSPs)
scaffold1303 (262-320)||(1815-1873)
scaffold1303 (344-397)||(1867-1920)
[»] chr8 (2 HSPs)
chr8 (344-397)||(22220813-22220866)
chr8 (261-320)||(22220760-22220819)
[»] chr2 (2 HSPs)
chr2 (344-397)||(18797851-18797904)
chr2 (291-320)||(18797898-18797927)
[»] chr6 (2 HSPs)
chr6 (261-316)||(12350973-12351028)
chr6 (349-397)||(12351031-12351079)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 40643769 - 40643389
Alignment:
Q  14 tcatcatgctaggcaacttagccagggtggtgagttgcttacccatgtctggcttttgatggctcatttaggcataactgaacaattccagatttttaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40643769 tcatcatgctaggcaacttagccagggtggtgagttgcttacccatgtctggcttttgatggctcatttaggcataactgaacaattccagatttctaag 40643670  T
Q  114 ggccatgtaagggcaaagttgaagctctcataaagtgtttggtgagtaattaagcgttcttgttacttatgtcttttttgtgtgccttcccattttgcct 213  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40643669 ggtcatgtaagggcaaagttgaagctctcataaagtgtttggtgagtaattaagcgttcttgttacttatgtcttttttgtgtgccttcccattttggct 40643570  T
Q  214 ttaactaatgtaatgatgtaatattgaaatttggctagtagtttgttgcatatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtg 313  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40643569 ttaactaatgtgatgatgtaatattgaaatttggttagtagtttgttgcatatgtaaaacctggttgtgtaagacactttaaaatgatgaactgtttgtg 40643470  T
Q  314 actactgactgaattttgaaa--atgaatgttactactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||| |||     ||| |||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40643469 actaccgac-----tttaaaatgatgaacgttactactgccttacctggttagaatctactatatattttatgaactggttgattt 40643389  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 40652444 - 40652287
Alignment:
Q  9 ggacatcatcatgctaggcaacttagccagggtggtgagttgcttacccatgtctggcttttgatggctcatttaggcataactgaacaattccagattt 108  Q
    |||| ||| ||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  40652444 ggacttcaacatgctaagcaactcacccaaggtggtgagttgcttacccatgtctggcttttgatggctcatttaggtataaccgaacaatttcagattt 40652345  T
Q  109 ttaagggccatgtaagggcaaagttgaagctctcataaagtgtttggtgagtaattaa 166  Q
     ||| || ||||||||||||||||| ||||||||||||| ||||||||| ||| ||||    
T  40652344 ctaaaggtcatgtaagggcaaagttaaagctctcataaaatgtttggtgggtagttaa 40652287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 40642584 - 40642441
Alignment:
Q  9 ggacatcatcatgctaggcaacttagccagggtggtgagttgcttacccatgtctggcttttgatggctcatttaggcataactgaacaattccagattt 108  Q
    |||| ||||||||||| ||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||    
T  40642584 ggacttcatcatgctaagcagcttagccagggtggcgagtttcttacccatgtctagcttttgatggctcatttaggtataaccgaacaatttcagattt 40642485  T
Q  109 ttaagggccatgtaagggcaaagttgaagctctcataaagtgtt 152  Q
     ||| || ||||||||||||||||||| | ||| ||||| ||||    
T  40642484 ctaaaggtcatgtaagggcaaagttgacgttcttataaaatgtt 40642441  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 35594928 - 35594870
Alignment:
Q  262 catatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtgactactg 320  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35594928 catatgtaaaacctggttgtgtaagacattttaaaatgatgaactgtttgtgactactg 35594870  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 35594876 - 35594823
Alignment:
Q  344 actactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35594876 actactgccttacctggttagaatctattatatcttttatgaactggttgattt 35594823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 535230 - 535317
Alignment:
Q  218 ctaatgtaatgatgtaatattgaaatttggctagtagtttgttgcatatgtaaatcctggttgtgtaagacactttaaaatgatgaac 305  Q
    ||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||    
T  535230 ctaatgtaatgatgtaataatgaaatttggttagtagtttgtcgcatatgcaaaacctggttgtgtaagacactttaaaatcatgaac 535317  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 1834497 - 1834555
Alignment:
Q  262 catatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtgactactg 320  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1834497 catatgtaaaacctggttgtgtaagacactttaaaatgatgaactgtttgtgactactg 1834555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 1834549 - 1834602
Alignment:
Q  344 actactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1834549 actactgccttacctggttagaatctattatatcttttatgaactggttgattt 1834602  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 25055785 - 25055842
Alignment:
Q  261 gcatatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtgactac 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25055785 gcatatgtaaaacctggttgtgtaagacactttaaaatgatgaactgtttgtgactac 25055842  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 25055838 - 25055891
Alignment:
Q  344 actactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25055838 actaccgccttacctggttagaatctattatatcttttatgaactggttgattt 25055891  T

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Target: scaffold1303 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 1815 - 1873
Alignment:
Q  262 catatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtgactactg 320  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1815 catatgtaaaacctggttgtgtaagacaatttaaaatgatgaactgtttgtgactactg 1873  T

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Target: scaffold1303; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 1867 - 1920
Alignment:
Q  344 actactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1867 actactgccttacctggttagaatctattatatcttttatgaactggttgattt 1920  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 22220813 - 22220866
Alignment:
Q  344 actactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22220813 actactgccttacctggttagaatctattatatcttttatgaactggttgattt 22220866  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 22220760 - 22220819
Alignment:
Q  261 gcatatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtgactactg 320  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22220760 gcatacgtaaaacctagttgtgtaagacactttaaaatgatgaactgtttgtgactactg 22220819  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 18797904 - 18797851
Alignment:
Q  344 actactgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18797904 actactgccttacctggttagaatctattatatcttttatgaactggttgattt 18797851  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 320
Target Start/End: Complemental strand, 18797927 - 18797898
Alignment:
Q  291 tttaaaatgatgaactgtttgtgactactg 320  Q
    ||||||||||||||||||||||||||||||    
T  18797927 tttaaaatgatgaactgtttgtgactactg 18797898  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 12350973 - 12351028
Alignment:
Q  261 gcatatgtaaatcctggttgtgtaagacactttaaaatgatgaactgtttgtgact 316  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12350973 gcatatgtaaaacctggttgtgtaagacactctaaaatgatgaactgtttgtgact 12351028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 12351031 - 12351079
Alignment:
Q  349 tgccttacctggttagaatctattatatattttatgaactggttgattt 397  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12351031 tgccttacctggttagaatctattatatcttttatgaactggttgattt 12351079  T

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