View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_11 (Length: 405)
Name: NF18125_low_11
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 24544751 - 24544387
Alignment:
| Q |
18 |
gttcccttcaaccttggcttattgcttaagttcaatgtacctcgtttttcttgcaactattggattgttccatatgattcacgtaattatttgtagtggc |
117 |
Q |
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| T |
24544751 |
gttcccttcaaccttggcttattgcttaagttcaatgtacctcgtttttcttgcaattattgaattcttccatatgattcacgtaattatttgtagtggc |
24544652 |
T |
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| Q |
118 |
aaaatcatctgttcacgacgcttgaaaaagacaagaacgtgtatacaattaaaagtgcatttaatataaacctctcaaagaaggttttttcttgtgtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24544651 |
aaaatcatctgttcacgacgcttgaaaaagacaagaacgtgtatacaattaaaagtgcatttaatataaacctctcaaagaaggttttttcttgtgtaaa |
24544552 |
T |
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| Q |
218 |
cacaaagagctaagcacattatttggatatacactaaaaaatagtaatatttaatttcttttgtgtgtatcaaaaagaagtttccaaatgtaatcnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24544551 |
cacaaagagctaagcacattatttggatatacactaaaaaatagtaatatttaatttctttagtgtgtatcaaaaagaagtttccaaatgtaatcaaaaa |
24544452 |
T |
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| Q |
318 |
nngaagtgtccaaatctgtggtctaaataagaagaatattccctctcaaatgaaaaatagcccaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24544451 |
aagaagtgtccaaatctgtggtctaaataagaagaatattccctctcaaatgaaaaatagcccaa |
24544387 |
T |
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