View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_12 (Length: 399)
Name: NF18125_low_12
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 33624501 - 33624134
Alignment:
| Q |
16 |
atgaaaaacatttatttggaaatctaaactaagccaatatttaaaagaatatcagctacttgattaacatcaccaataacacggtcgatctcaataatct |
115 |
Q |
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| T |
33624501 |
atgaaaaacatttatttggaaatctaaactaagccaatatttaaaagagtatcagctacttgattaacatcaccaataacacggtcgatctcaataatct |
33624402 |
T |
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| Q |
116 |
aacgtacaagattannnnnnnggtt-ttacatagcgtatacaagattatcatacatactttgtcnnnnnnntaaaatagattatcatctatagatagata |
214 |
Q |
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| T |
33624401 |
aacgtacaagattatttttttggttattacatagcgtatacaagattatcatacatactttgtcaaaaaaataaaatagattatcatctatagatagata |
33624302 |
T |
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| Q |
215 |
tagatagatacttgatggagagagttcatgaaaaggaaattaactttgacattttattcatgccctgaaaagactataatcataccgacactacagt-cc |
313 |
Q |
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| T |
33624301 |
tagatagatacttgatggagagagttcatgaaaaggaaattaactttgacattttattcatgccctgaaaagactataatcataccgacactacagtccc |
33624202 |
T |
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| Q |
314 |
cattatatattgtcacctgttcaaaaatatggaaagattaccctcttgtattgtgatacgagcaagaa |
381 |
Q |
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| T |
33624201 |
cattatatattgtcacctgttcaaaaatatggaaagattacccccttgtactgtgatacgagcaagaa |
33624134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 218 - 362
Target Start/End: Complemental strand, 33620889 - 33620748
Alignment:
| Q |
218 |
atagatacttgatggagagagttcatgaaaaggaaattaactttgacattttattcatgccctgaaaagactataatcataccgacactacagtcccatt |
317 |
Q |
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| T |
33620889 |
ataggtacttgatggagaaagttcatgaaaaggaaattaactttgacattttattcatgcccttcaaagactaaaataatac---caatacagccccatg |
33620793 |
T |
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| Q |
318 |
atatattgtcacctgttcaaaaatatggaaagattaccctcttgt |
362 |
Q |
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| T |
33620792 |
atttattgtcacctgttcaataatatcgaaatattatccacttgt |
33620748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 33626826 - 33626730
Alignment:
| Q |
238 |
gttcatgaaaaggaaattaactttgacattttattcatgccctgaaaagactataatcataccgacactacagtcccattatatattgtcacctgttcaa |
337 |
Q |
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||||||||||| ||||||||||||||| |||||||||||| | ||||| |||||| |||||||||||| | |||||||| ||| ||||| ||||||| |
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| T |
33626826 |
gttcatgaaaacgaaattaactttgacgttttattcatgctcctaaaaggctataaccataccgacact---gccccattatttatggtcacttgttcaa |
33626730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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