View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18125_low_13 (Length: 371)

Name: NF18125_low_13
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18125_low_13
NF18125_low_13
[»] chr3 (28 HSPs)
chr3 (135-353)||(21342667-21342887)
chr3 (9-155)||(21343548-21343694)
chr3 (236-352)||(23328183-23328298)
chr3 (73-155)||(11016881-11016963)
chr3 (74-155)||(19843449-19843530)
chr3 (74-155)||(42148230-42148311)
chr3 (103-155)||(55176402-55176454)
chr3 (74-155)||(2063261-2063342)
chr3 (73-154)||(17561693-17561774)
chr3 (285-350)||(40023453-40023518)
chr3 (74-155)||(10492927-10493008)
chr3 (110-155)||(21342843-21342888)
chr3 (253-350)||(45398931-45399027)
chr3 (72-155)||(31977592-31977675)
chr3 (73-154)||(51755502-51755582)
chr3 (73-155)||(55282869-55282951)
chr3 (74-155)||(27738543-27738624)
chr3 (74-155)||(42760266-42760347)
chr3 (74-123)||(55175614-55175663)
chr3 (77-153)||(34645500-34645576)
chr3 (75-154)||(16861065-16861144)
chr3 (35-70)||(39021053-39021088)
chr3 (109-155)||(12898744-12898790)
chr3 (73-155)||(32744206-32744288)
chr3 (73-155)||(52514225-52514307)
chr3 (76-117)||(14037148-14037189)
chr3 (103-151)||(2274977-2275025)
chr3 (42-70)||(45399084-45399112)
[»] chr7 (27 HSPs)
chr7 (222-353)||(48161845-48161974)
chr7 (74-153)||(39172959-39173038)
chr7 (74-155)||(19073630-19073711)
chr7 (74-155)||(26832742-26832823)
chr7 (240-350)||(34390097-34390206)
chr7 (84-155)||(45791253-45791324)
chr7 (89-146)||(34508573-34508630)
chr7 (74-155)||(48901496-48901577)
chr7 (74-155)||(35839324-35839405)
chr7 (74-155)||(12081250-12081331)
chr7 (30-70)||(35745576-35745616)
chr7 (73-155)||(29097914-29097996)
chr7 (110-155)||(28563632-28563677)
chr7 (236-324)||(6585043-6585130)
chr7 (73-153)||(32606735-32606815)
chr7 (84-151)||(25195981-25196048)
chr7 (74-155)||(26833528-26833609)
chr7 (73-155)||(27658030-27658112)
chr7 (141-179)||(32606772-32606810)
chr7 (17-70)||(34391467-34391521)
chr7 (109-155)||(37345160-37345206)
chr7 (135-173)||(37345161-37345199)
chr7 (74-131)||(39173183-39173240)
chr7 (135-173)||(45791285-45791323)
chr7 (73-155)||(47750461-47750543)
chr7 (73-154)||(19804547-19804628)
chr7 (110-155)||(38084804-38084849)
[»] chr1 (30 HSPs)
chr1 (74-155)||(15696788-15696869)
chr1 (73-155)||(27649190-27649272)
chr1 (74-132)||(641534-641592)
chr1 (73-154)||(21140959-21141040)
chr1 (74-155)||(39896613-39896694)
chr1 (273-349)||(46814336-46814412)
chr1 (235-353)||(7857785-7857902)
chr1 (74-155)||(27650048-27650129)
chr1 (253-350)||(24659064-24659159)
chr1 (74-155)||(45780963-45781044)
chr1 (74-155)||(9618656-9618737)
chr1 (272-350)||(27031708-27031786)
chr1 (73-155)||(49502038-49502120)
chr1 (77-155)||(49502876-49502954)
chr1 (74-155)||(45780168-45780249)
chr1 (74-155)||(51461907-51461988)
chr1 (73-153)||(35255356-35255436)
chr1 (83-155)||(49875393-49875465)
chr1 (103-154)||(14985302-14985353)
chr1 (73-155)||(49874941-49875023)
chr1 (74-131)||(640987-641044)
chr1 (110-155)||(37992604-37992649)
chr1 (72-155)||(26769099-26769182)
chr1 (77-155)||(4208334-4208412)
chr1 (77-155)||(42572814-42572892)
chr1 (78-155)||(28456775-28456852)
chr1 (74-154)||(22528656-22528736)
chr1 (17-72)||(24659213-24659269)
chr1 (30-70)||(27031596-27031635)
chr1 (77-105)||(50683167-50683195)
[»] chr8 (33 HSPs)
chr8 (74-155)||(45251971-45252052)
chr8 (77-155)||(43519842-43519921)
chr8 (74-155)||(4529283-4529364)
chr8 (74-155)||(31746043-31746124)
chr8 (73-155)||(3695304-3695386)
chr8 (74-155)||(41858460-41858541)
chr8 (236-352)||(15821212-15821327)
chr8 (74-154)||(20859662-20859742)
chr8 (236-350)||(35816079-35816189)
chr8 (73-155)||(40745338-40745420)
chr8 (74-155)||(34798865-34798946)
chr8 (104-155)||(4528235-4528286)
chr8 (104-155)||(6268950-6269001)
chr8 (73-155)||(25994383-25994465)
chr8 (74-155)||(34503116-34503197)
chr8 (296-350)||(38577682-38577736)
chr8 (73-154)||(39831090-39831171)
chr8 (74-155)||(40075067-40075148)
chr8 (73-153)||(2416136-2416216)
chr8 (135-179)||(4528241-4528285)
chr8 (74-154)||(22550923-22551003)
chr8 (110-154)||(40740877-40740921)
chr8 (104-155)||(3696127-3696178)
chr8 (75-154)||(41471029-41471108)
chr8 (109-155)||(5532431-5532477)
chr8 (73-155)||(25995152-25995234)
chr8 (109-155)||(28618493-28618539)
chr8 (66-151)||(914647-914732)
chr8 (110-155)||(35645892-35645937)
chr8 (110-155)||(36344977-36345022)
chr8 (134-179)||(44726476-44726521)
chr8 (42-70)||(38577554-38577582)
chr8 (110-154)||(41472072-41472116)
[»] chr2 (33 HSPs)
chr2 (236-347)||(14106355-14106465)
chr2 (76-155)||(38340906-38340985)
chr2 (77-155)||(43328880-43328958)
chr2 (74-155)||(2270826-2270907)
chr2 (232-349)||(14405334-14405451)
chr2 (74-155)||(29600698-29600779)
chr2 (73-123)||(4015192-4015242)
chr2 (236-352)||(7874424-7874538)
chr2 (74-155)||(35935152-35935233)
chr2 (288-350)||(5254391-5254453)
chr2 (73-155)||(33416975-33417057)
chr2 (103-155)||(2528636-2528688)
chr2 (236-325)||(7460836-7460924)
chr2 (74-155)||(29948819-29948900)
chr2 (104-155)||(4014232-4014283)
chr2 (73-155)||(12252056-12252138)
chr2 (74-155)||(15488200-15488281)
chr2 (17-70)||(14405485-14405538)
chr2 (30-70)||(14106276-14106316)
chr2 (74-154)||(20937832-20937912)
chr2 (74-149)||(40969703-40969776)
chr2 (108-155)||(33002363-33002410)
chr2 (73-155)||(4286758-4286840)
chr2 (110-148)||(6233639-6233677)
chr2 (242-344)||(16952223-16952324)
chr2 (242-344)||(17022888-17022989)
chr2 (242-344)||(17060194-17060295)
chr2 (73-155)||(28420271-28420353)
chr2 (110-155)||(3086120-3086165)
chr2 (110-155)||(30802014-30802059)
chr2 (42-70)||(5254538-5254566)
chr2 (115-155)||(10334412-10334452)
chr2 (110-154)||(43258791-43258835)
[»] scaffold0019 (1 HSPs)
scaffold0019 (74-155)||(134368-134449)
[»] chr4 (28 HSPs)
chr4 (74-155)||(53535927-53536008)
chr4 (74-155)||(46169255-46169336)
chr4 (73-155)||(1736145-1736227)
chr4 (74-155)||(46165680-46165761)
chr4 (74-155)||(28322174-28322255)
chr4 (73-155)||(33812879-33812961)
chr4 (73-155)||(40962888-40962970)
chr4 (253-350)||(31050511-31050607)
chr4 (74-155)||(36480594-36480675)
chr4 (74-155)||(42528806-42528887)
chr4 (115-154)||(44680132-44680171)
chr4 (272-350)||(2825918-2825996)
chr4 (73-155)||(55587292-55587374)
chr4 (110-155)||(11566859-11566904)
chr4 (74-155)||(28157516-28157597)
chr4 (67-155)||(9013926-9014014)
chr4 (103-151)||(40239591-40239639)
chr4 (135-179)||(46165716-46165760)
chr4 (103-154)||(3183945-3183996)
chr4 (103-150)||(3186126-3186173)
chr4 (104-155)||(40240427-40240478)
chr4 (134-172)||(34530826-34530864)
chr4 (272-350)||(35341207-35341284)
chr4 (109-155)||(38368201-38368247)
chr4 (109-155)||(55588341-55588387)
chr4 (73-154)||(40061219-40061300)
chr4 (73-101)||(40963797-40963825)
chr4 (110-154)||(43176686-43176730)
[»] chr5 (7 HSPs)
chr5 (74-155)||(8679498-8679579)
chr5 (74-155)||(8680300-8680381)
chr5 (73-131)||(18563392-18563450)
chr5 (74-155)||(20509289-20509370)
chr5 (74-154)||(38408525-38408605)
chr5 (74-123)||(13950518-13950567)
chr5 (73-137)||(36503007-36503071)
[»] chr6 (7 HSPs)
chr6 (74-155)||(456098-456179)
chr6 (74-146)||(24991264-24991336)
chr6 (74-148)||(455404-455478)
chr6 (78-154)||(24719880-24719956)
chr6 (73-155)||(15871725-15871806)
chr6 (110-155)||(17337622-17337667)
chr6 (110-154)||(9049142-9049186)
[»] scaffold0494 (1 HSPs)
scaffold0494 (74-154)||(11512-11592)
[»] scaffold0011 (1 HSPs)
scaffold0011 (103-153)||(235896-235946)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 135 - 353
Target Start/End: Complemental strand, 21342887 - 21342667
Alignment:
Q  135 ttcgacagttaactgccgaatgacattttggtaaattaccagtgtcaacatcaattctcctaagatggacaccttaatagnnnnnnn--cactagaaaga 232  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  21342887 ttcggcagttaactgtcgaatgacattttggtaaattactagtgtcaacatcaattctcctaagatggacaccttaatagaaaaaaaaacactagaaaga 21342788  T
Q  233 cagtccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaag 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21342787 cagtccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaag 21342688  T
Q  333 cttctaaccgaatgaacaagc 353  Q
    |||||||||||||||||||||    
T  21342687 cttctaaccgaatgaacaagc 21342667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 21343694 - 21343548
Alignment:
Q  9 acatcatcaccacctaacatggcccgtgaagataacccaccaaaacacatcaccacctaagatgagagaattgttgttgacacatatgcattgactgtgt 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21343694 acatcataaccacctaacatggcccgtgaagataacccaccaaaacacatcaccacctaagatgagagaattgttgttgacacatatgcattgactgtgt 21343595  T
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21343594 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 21343548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 23328183 - 23328298
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagctt 335  Q
    |||||||||||  ||| |||| ||||||||||||| ||||||| ||   |||||||||| ||||||||||||||||||  |||||||||||||||||||     
T  23328183 tccacaaccacccatcgtcactactcacccccaaa-gaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacattcgaaaagctc 23328281  T
Q  336 ctaaccgaatgaacaag 352  Q
    |||||||||||||||||    
T  23328282 ctaaccgaatgaacaag 23328298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 11016963 - 11016881
Alignment:
Q  73 agagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  11016963 agagaattgctgttgacacat-tgcataagactgtgtcacactagtaatttaccgaaatgcccttcaacagttaactgccgaat 11016881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 19843530 - 19843449
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||  | ||| ||||||||||||||||    
T  19843530 gagaattgttgttgacacatatgctttggctgtgtcatattagtaatttaccgaaatgctcatcggcagttaactgccgaat 19843449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 42148230 - 42148311
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| ||||||||||||||||||||| |||||||||||||| |||||||  |||| | | ||| ||||||||||||||||    
T  42148230 gagaatcgttgttgacacatatgcattggctgtgtcacactagcaatttactaaaatattcctcggcagttaactgccgaat 42148311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 55176454 - 55176402
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  55176454 ctgtgtcacactagtaatttaccgaaatgcccttcgacagttaactgtcgaat 55176402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 2063342 - 2063261
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| |||| |||||||||||||| | ||||||||| ||||||||||  |||||||| ||| |||||| |||||||||    
T  2063342 gagaattgctgtttacacatatgcattggccgtgtcacaccagtaatttactaaaatgtccctcggcagttacctgccgaat 2063261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 17561693 - 17561774
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||||||||||||| ||  ||| ||| | ||||| ||||||||||| |||||||| | |||||||||||||||||    
T  17561693 agagaattgttgttgacacatttgatttggctgagacacacgagtaatttacctaaatgtcccttgacagttaactgccgaa 17561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 40023453 - 40023518
Alignment:
Q  285 aataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    |||||||||| |||||| |||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  40023453 aataaaactcccagactacaacaccctagctgagccacattcgaaaagctcctaaccgaatgaaca 40023518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 10493008 - 10492927
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||   | ||| ||| |  |||||||||||||||| ||||| || ||||||||||||||||||||    
T  10493008 gagaattgttgttgacacattacctttggctgagaaacactagtaatttacccaaatgcccctcgacagttaactgccgaat 10492927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 21342843 - 21342888
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||    
T  21342843 acactagtaatttaccaaaatgtcattcgacagttaactgccgaat 21342888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 45399027 - 45398931
Alignment:
Q  253 tcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    |||| |||||||||||| ||||||||||    |||| ||||| || ||||||||||| |||| | |||||||||||||||||  ||||||||||||||    
T  45399027 tcactactcacccccaa-cgaacaccccacaaaatagaactcccaaacttcaacacctaagttgcgccacattcgaaaagctcataaccgaatgaaca 45398931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 31977592 - 31977675
Alignment:
Q  72 gagagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||| |||| ||| |  |||| ||||||||||| |||||  | ||| |||||||||| |||||    
T  31977592 gagagaattgttgttgacacatatgtattggctgagaaacacgagtaatttacccaaatgctcatcggcagttaactgtcgaat 31977675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 51755582 - 51755502
Alignment:
Q  73 agagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||||||| || |||||  | |||||| ||| |||||||||||||||||| || |||||||||||||||||||    
T  51755582 agagaattgttgttgacatat-tgcataaggctgtgtgaca-tagtaatttaccgaaatggccctcgacagttaactgccgaa 51755502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 55282951 - 55282869
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||| ||||||||||  || |  |||| |||||||||   |||||||| | ||||||||||||||||||    
T  55282951 agagaattgttgttgacatatatgcattggttgagaaacacgagtaatttattcaaatgtccattgacagttaactgccgaat 55282869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 27738543 - 27738624
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||  ||||| ||  |||||| ||  |||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  27738543 gagaattgttgttcccacatttggtttgactatgctacacgagtaatttacccaaatgcccttcggcagttaactgccgaat 27738624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 42760347 - 42760266
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| ||  ||| ||| | ||||| ||||||||||| ||||| |||||| | ||||||| ||||||    
T  42760347 gagaattgttgttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccttcgccggttaactaccgaat 42760266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 55175614 - 55175663
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaattta 123  Q
    |||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  55175614 gagaattgctgttcacacatatgcattggttgtgtcacactagtaattta 55175663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 34645500 - 34645576
Alignment:
Q  77 aattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccga 153  Q
    ||||||||||||||||| | | ||| ||| |  |||| ||||||||||| |||| ||||||| ||||||||||||||    
T  34645500 aattgttgttgacacatttaccttggctgagaaacacgagtaatttacctaaatatccttcggcagttaactgccga 34645576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 16861065 - 16861144
Alignment:
Q  75 agaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||| ||||||||||| ||  ||| ||| | ||||| ||||||||||| ||||| || |||||||||||||| ||||    
T  16861065 agaattgctgttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccctcgacagttaactgtcgaa 16861144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 39021053 - 39021088
Alignment:
Q  35 tgaagataacccaccaaaacacatcaccacctaaga 70  Q
    |||||||||||||||||| |||||||||||||||||    
T  39021053 tgaagataacccaccaaatcacatcaccacctaaga 39021088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 12898790 - 12898744
Alignment:
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  12898790 cacacgagtaatttacccaaatgcccctcgacagttaactgccgaat 12898744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 32744288 - 32744206
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||| ||||||||||||||||   ||||| ||| |  |||||||||||||||| ||||| || |||  |||||||||||||||    
T  32744288 agagtattgttgttgacacattgccattggctgagaaacactagtaatttacccaaatgcccctcggtagttaactgccgaat 32744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 52514225 - 52514307
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||| |||| ||| |  |||| ||||||||||  ||||  || ||| || |||||||||||||    
T  52514225 agagaattgttgttgacacatatgtattggctgagaaacacgagtaatttactcaaatacccctcggcaattaactgccgaat 52514307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 14037148 - 14037189
Alignment:
Q  76 gaattgttgttgacacatatgcattgactgtgtcacactagt 117  Q
    |||||| ||||||| ||||||||||| |||||||||||||||    
T  14037148 gaattgatgttgacgcatatgcattggctgtgtcacactagt 14037189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 2275025 - 2274977
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgcc 151  Q
    ||||||||||| ||||||||||| ||||||| || | ||||||||||||    
T  2275025 ctgtgtcacacgagtaatttacctaaatgtcattgggcagttaactgcc 2274977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 45399112 - 45399084
Alignment:
Q  42 aacccaccaaaacacatcaccacctaaga 70  Q
    |||||||||||||||||||||||||||||    
T  45399112 aacccaccaaaacacatcaccacctaaga 45399084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 48161845 - 48161974
Alignment:
Q  222 cactagaaagacagtccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagcca 321  Q
    ||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||| ||  |||||||||||||||||||||||  |||||||||||||    
T  48161845 cactagaaatacagtccacaaccacctatcgtcacaattcacccccaaacgaacacctctcagaataaaactctcagacttcaac-gccaagtcgagcca 48161943  T
Q  322 cattcgaaaagcttctaaccgaatgaacaagc 353  Q
    |||||||||||| ||||||| |||||||||||    
T  48161944 cattcgaaaagc-tctaacccaatgaacaagc 48161974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 39172959 - 39173038
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccga 153  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || ||| ||||||||||||||    
T  39172959 gagaattgttgttgacacatatgcattggctgtgtcacactagtaatttaccgaaatacccctcggcagttaactgccga 39173038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 19073711 - 19073630
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||| |||||    
T  19073711 gagaattgcggttgacacatatgcattgattgtgtcacactagtaatttaccgaaatatccctcggcagttaactgtcgaat 19073630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 26832742 - 26832823
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |  ||  ||||||||||||||||    
T  26832742 gagaattgttgttgacacatatgcattggctgtgtcacactagtaatttactgaaatgccactcagcagttaactgccgaat 26832823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 34390206 - 34390097
Alignment:
Q  240 caaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaa 339  Q
    |||||||  ||| |||| ||||| ||||||| ||||||||||   |||||||||| |||||| |||||||||||| |||||||||| |||||||| ||||    
T  34390206 caaccacccatcgtcactactcatccccaaa-gaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatttgaaaagctcctaa 34390108  T
Q  340 ccgaatgaaca 350  Q
     ||||||||||    
T  34390107 tcgaatgaaca 34390097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 45791253 - 45791324
Alignment:
Q  84 gttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||| |||||||| |||||||||||||  ||||||| |||| |||||||||| |||||    
T  45791253 gttgacacatatgcattggctgtgtcatactagtaatttactaaaatgtctttcggcagttaactgtcgaat 45791324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 34508573 - 34508630
Alignment:
Q  89 cacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaa 146  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||    
T  34508573 cacatatgctttggctgtgtcacactagtaatttaccaaaatgtcctttgacagttaa 34508630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 48901577 - 48901496
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| ||| |  |||| ||||||||||| |||||||  | | ||||||||||||||||    
T  48901577 gagaattgttgttgacacatatgcattggctgagaaacacgagtaatttacccaaatgtctctaggcagttaactgccgaat 48901496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 35839324 - 35839405
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| |||||  |  ||||||||||||||||||||| |||||| | |||||||||||| ||||||||    
T  35839324 gagaattgttgttgacacat-tgcataaggttgtgtcacactagtaatttactgaaatgcctttcgacagttaattgccgaat 35839405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 12081331 - 12081250
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||| |||| ||| |  |||| ||||||||| | ||||| |||||| ||||||| ||||||||    
T  12081331 gagaattgttgttgacacatatgtattggctgagaaacacgagtaatttatccaaatgcccttcggcagttaattgccgaat 12081250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 35745576 - 35745616
Alignment:
Q  30 gcccgtgaagataacccaccaaaacacatcaccacctaaga 70  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35745576 gcccctgaagataacccaccaaaacacatcaccacctaaga 35745616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 29097996 - 29097914
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||| | ||||||||||||||||||| ||| |  |||| ||||||||| | |||| ||| ||| ||||||||||||||||    
T  29097996 agagaatcgctgttgacacatatgcattggctgagaaacacgagtaatttatccaaatatccctcggcagttaactgccgaat 29097914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 28563632 - 28563677
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||||    
T  28563632 acactagtagtttacccaaatgtccctcgacagttaactgccgaat 28563677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 6585130 - 6585043
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacat 324  Q
    |||||||||||| ||| |||| ||||||| |||||  | |||||||   |||||||||| ||||||||||||||||||  |||||||||    
T  6585130 tccacaaccactcatcgtcactactcacctccaaat-agcacccctcaaaataaaactcccagacttcaacacccaagctgagccacat 6585043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 32606735 - 32606815
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccga 153  Q
    |||| ||||||||||||||||   ||||| ||| |  ||||| |||||||||| |||||||||||| ||||||||| ||||    
T  32606735 agagtattgttgttgacacattgccattggctgagaaacactggtaatttacccaaatgtccttcggcagttaactcccga 32606815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 25196048 - 25195981
Alignment:
Q  84 gttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgcc 151  Q
    |||||||||||||||||| ||| |  |||| ||||||||||  |||||||| ||| ||||||||||||    
T  25196048 gttgacacatatgcattggctgagaaacacgagtaatttacataaatgtccatcggcagttaactgcc 25195981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 26833609 - 26833528
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| | |||  | |||||  |||||||||||||| ||||||| || ||| ||||||||||||||||    
T  26833609 gagaattgttgttgacacat-tacataaggctgtgctacactagtaatttatcgaaatgcccatcggcagttaactgccgaat 26833528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 27658112 - 27658030
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||| |||||||||||   | ||| ||| |  |||||||||||||||| |||||||| | | ||||||||||||||||    
T  27658112 agagaattgatgttgacacattacctttggctgagaaacactagtaatttacccaaatgtcccttggcagttaactgccgaat 27658030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 32606810 - 32606772
Alignment:
Q  141 agttaactgccgaatgacattttggtaaattaccagtgt 179  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  32606810 agttaactgccgaaggacatttgggtaaattaccagtgt 32606772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 34391521 - 34391467
Alignment:
Q  17 accacctaacatggcccgtgaagataa-cccaccaaaacacatcaccacctaaga 70  Q
    |||||| ||||  |||| ||||||||| |||||||||||||||||||||||||||    
T  34391521 accaccaaacaaagcccctgaagataaacccaccaaaacacatcaccacctaaga 34391467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 37345206 - 37345160
Alignment:
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||| ||||||||||| |||||||||||| |||||||||| |||||    
T  37345206 cacacgagtaatttacctaaatgtccttcggcagttaactgtcgaat 37345160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 37345161 - 37345199
Alignment:
Q  135 ttcgacagttaactgccgaatgacattttggtaaattac 173  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  37345161 ttcgacagttaactgccgaaggacatttaggtaaattac 37345199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 39173240 - 39173183
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatg 131  Q
    ||||||||||||||||| || |||||  | |||||||||||||||||||||||||||||    
T  39173240 gagaattgttgttgacagat-tgcataaggctgtgtcacactagtaatttaccgaaatg 39173183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 45791323 - 45791285
Alignment:
Q  135 ttcgacagttaactgccgaatgacattttggtaaattac 173  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  45791323 ttcgacagttaactgccgaaagacattttagtaaattac 45791285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 47750461 - 47750543
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||   ||||| ||| |  ||||| |||||||| | ||||| || ||| ||||||||||||||||    
T  47750461 agagaattgttgttgacacatcgccattggctgagaaacactggtaatttatccaaatgcccctcggcagttaactgccgaat 47750543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 19804628 - 19804547
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||||||||||||| |   ||| ||| | ||||| ||||||||||| ||||| || |||  ||||||||||||||    
T  19804628 agagaattgttgttgacacattttgtttggctgagacacacgagtaatttacctaaatgcccctcggtagttaactgccgaa 19804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 38084849 - 38084804
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| ||||| || ||| ||||||||||||||||    
T  38084849 acactagtaatttacccaaatgcccctcggcagttaactgccgaat 38084804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 15696869 - 15696788
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  15696869 gagaattgttgttgacacatatgcattggctgtgtcacactagtaatttactaaaatgcccttcgacagttaactgccgaat 15696788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 27649190 - 27649272
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||| |||| ||||    
T  27649190 agagaattgttgttgacacatatgcattggctgtgtcacactagtaatttaccgaaatgcccctcggcagttagctgctgaat 27649272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 641592 - 641534
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgt 132  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  641592 gagaattgttgttgacacatatgtattggctgtgtcacactagtaatttaccgaaatgt 641534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 21140959 - 21141040
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||||||||||||| ||  ||| ||| | ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  21140959 agagaattgttgttgacacatttggtttggctgagacacacgagtaatttacctaaatgtccttcgacaattaactgccgaa 21141040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 39896694 - 39896613
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||  |  |||||||||||||| |||||    
T  39896694 gagaattgctgttgacacatatgcattggctgtgtcacactaataatttaccaaaatccctctcgacagttaactgtcgaat 39896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 46814336 - 46814412
Alignment:
Q  273 aacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaac 349  Q
    ||||||||| | |||||||||| || ||||||||||||| | |||||||||||||||||||| |||| |||||||||    
T  46814336 aacacccctcgaaataaaactcccatacttcaacacccacgccgagccacattcgaaaagctcctaatcgaatgaac 46814412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 7857902 - 7857785
Alignment:
Q  235 gtccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagct 334  Q
    ||||||||||||  |||  ||| ||||||||||| | ||||||||||   |||||||||| |||||||||||||||||   ||||||||||  |||||||    
T  7857902 gtccacaaccacccatcgccactactcacccccata-gaacacccctcaaaataaaactcccagacttcaacacccaaactgagccacatttcaaaagct 7857804  T
Q  335 tctaaccgaatgaacaagc 353  Q
     ||||||||||| ||||||    
T  7857803 cctaaccgaatggacaagc 7857785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 27650129 - 27650048
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| ||||||||||||| |||||  | ||||||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  27650129 gagaatcgttgttgacacat-tgcataaggctgtgtcacactagtaatttaccgaaatgcccctcggcagttaactgccgaat 27650048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 24659159 - 24659064
Alignment:
Q  253 tcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    |||| |||||||||||||  |||||||||   |||||||||| ||||||| ||| |||| |  |||||||||||||||||||||||||||||||||||    
T  24659159 tcactactcacccccaaat-aacacccctcaaaataaaactcccagactt-aactcccaggctgagccacattcgaaaagcttctaaccgaatgaaca 24659064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 45781044 - 45780963
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| ||| |  |||| ||||||||||| ||||| || ||| |||||||||| |||||    
T  45781044 gagaattgttgttgacacatatgcattggctgagaaacacgagtaatttacccaaatgcccctcgtcagttaactgtcgaat 45780963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 9618656 - 9618737
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| |||||  | ||||||||||| |||||||||||||||||| | | | ||||||||||||||||    
T  9618656 gagaattgttgttgacacat-tgcataaggctgtgtcacacgagtaatttaccgaaatgttccttggcagttaactgccgaat 9618737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 27031708 - 27031786
Alignment:
Q  272 gaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    ||||||||||   |||||||||| |||||||||||| ||||   |||||||||||||||||||  ||||||||||||||    
T  27031708 gaacacccctcaaaataaaactcccagacttcaacatccaaactgagccacattcgaaaagctcttaaccgaatgaaca 27031786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 49502038 - 49502120
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||||||   |  |||| ||||||||||| |||||  | ||| ||||||||||||||||    
T  49502038 agagaattgttgttgacacatatgcattgaccaagaaacacgagtaatttacctaaatgctcctcggcagttaactgccgaat 49502120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 49502954 - 49502876
Alignment:
Q  77 aattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||| ||| |  |||| ||||||||||| |||||||  ||| || |||||||||||||    
T  49502954 aattgttgttgacacatatgcattggctgagaaacacgagtaatttacccaaatgtctctcggcaattaactgccgaat 49502876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 45780168 - 45780249
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| ||| |  |||  ||||||||||  |||||||| ||| |||||||||| |||||    
T  45780168 gagaattgttgttgacacatatgcattggctgagaaacatgagtaatttactcaaatgtccctcggcagttaactgtcgaat 45780249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 51461988 - 51461907
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||| ||||||||||||||||| ||| |  |||| ||||||||||| ||||| |  ||| ||||||||||||||||    
T  51461988 gagaattgttattgacacatatgcattggctgagaaacacgagtaatttacccaaatgccactcggcagttaactgccgaat 51461907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 35255436 - 35255356
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccga 153  Q
    ||||||||| | ||||||||||||||||| ||| |  |||| |||||||||||| |||| || ||| ||||||||||||||    
T  35255436 agagaattgctcttgacacatatgcattggctgagaaacacgagtaatttaccgtaatgcccctcggcagttaactgccga 35255356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 49875465 - 49875393
Alignment:
Q  83 tgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||| |||    |||| ||||||||||||||||| || ||||||||||||| ||||||    
T  49875465 tgttgacacatatgcattggctgataaacacgagtaatttaccgaaatgcccctcgacagttaactaccgaat 49875393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 14985302 - 14985353
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||||| |||||  ||||| ||||||||||||||||||||||    
T  14985302 ctgtgtcacactagtactttacgaaaatgcccttcgacagttaactgccgaa 14985353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 49874941 - 49875023
Alignment:
Q  73 agagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||| |||||  |  |||||||||| ||||||||||  || ||||| ||||||||||||||||||||    
T  49874941 agagaattgttgttgacacat-tgcataaggttgtgtcacacgagtaatttactaaattgtccctcgacagttaactgccgaat 49875023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 640987 - 641044
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatg 131  Q
    |||||||||||||||||||| |||||  | |||||||||||||||||||||||||||||    
T  640987 gagaattgttgttgacacat-tgcataaggctgtgtcacactagtaatttaccgaaatg 641044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 37992649 - 37992604
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  37992649 acactagtaatttacccaaatatccctcgacagttaactgccgaat 37992604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 26769099 - 26769182
Alignment:
Q  72 gagagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||| | ||||||||||||||||| ||| |  |||| ||||||||||  |||| ||  ||| ||||||||||||||||    
T  26769099 gagagaattgctattgacacatatgcattggctgagaaacacgagtaatttactcaaatatctctcggcagttaactgccgaat 26769182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 4208334 - 4208412
Alignment:
Q  77 aattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||| ||  |||| || |  |||| ||||||||||  |||| ||||||| ||||||||||||||||    
T  4208334 aattgttgttgacacatttggtttgattgagaaacacgagtaatttactcaaatatccttcggcagttaactgccgaat 4208412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 42572892 - 42572814
Alignment:
Q  77 aattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||  ||||| |  |||| || |||||||| ||||  || |||||||||||||| |||||    
T  42572892 aattgttgttgacacatatgcaaagactgagaaacaccagcaatttacctaaatacccctcgacagttaactgtcgaat 42572814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 28456852 - 28456775
Alignment:
Q  78 attgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||| |||    |||| |||||| |||| ||||  || ||| ||||||||||||||||    
T  28456852 attgttgttgacacatatgcattggctgacaaacacgagtaatctacccaaatacccctcggcagttaactgccgaat 28456775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 22528736 - 22528656
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||| ||||  ||||| || |||| ||||  ||||| ||||||||||| ||||  |||||| |||||||||||||||    
T  22528736 gagaattgatgttcccacatttggattggctgtaccacacgagtaatttacctaaattcccttcggcagttaactgccgaa 22528656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 24659269 - 24659213
Alignment:
Q  17 accacctaacatggcccgtgaagataa-cccaccaaaacacatcaccacctaagatg 72  Q
    |||||| ||||  |||| ||||||||| ||||||||||||||| |||||||||||||    
T  24659269 accaccaaacaaagcccctgaagataaacccaccaaaacacataaccacctaagatg 24659213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 27031596 - 27031635
Alignment:
Q  30 gcccgtgaagataacccaccaaaacacatcaccacctaaga 70  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  27031596 gcccttgaagataaccc-ccaaaacacatcaccacctaaga 27031635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 50683167 - 50683195
Alignment:
Q  77 aattgttgttgacacatatgcattgactg 105  Q
    |||||||||||||||||||||||||||||    
T  50683167 aattgttgttgacacatatgcattgactg 50683195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 45251971 - 45252052
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | ||| ||||||||||||||||    
T  45251971 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttatcaaaatgttcatcggcagttaactgccgaat 45252052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 43519842 - 43519921
Alignment:
Q  77 aattgttgttgacacatatgcattgactgtgtcacact-agtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  43519842 aattgttgttgacacatatgcattggctgtgtcacactaagtaatttaccaaaatgcccctcgacagttaactgccgaat 43519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 4529364 - 4529283
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||  ||||||| |||||  |||||||||||||||    
T  4529364 gagaattgctgttgacacatatgtattgattgtgtcacactagtaatttattgaaatgttcttcggtagttaactgccgaat 4529283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 31746124 - 31746043
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| |||| |||||||||||| | ||||||||||| ||||||||||  |||||||||||| ||||||||||||||||    
T  31746124 gagaattgctgtttacacatatgcatcggctgtgtcacaccagtaatttactaaaatgtccttcggcagttaactgccgaat 31746043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 3695304 - 3695386
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||||||| ||| |  |||| ||||||||| | ||||| || ||| ||||||||||||||||    
T  3695304 agagaattgttgttgacacatatgcattggctgagaaacacgagtaatttatccaaatgcccctcggcagttaactgccgaat 3695386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 41858460 - 41858541
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||| ||||| ||| |  |||| ||||||||| | ||||| || ||||||||||||||||||||    
T  41858460 gagaattgttgttgacacatatacattggctgagaaacacgagtaatttatccaaatgcccctcgacagttaactgccgaat 41858541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 15821212 - 15821327
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagctt 335  Q
    |||||||||||| |||  ||| |||||| || ||| |||||| |||   |||||||||| |||||||||||| || ||  |||||||||||||||||||     
T  15821212 tccacaaccactcatcgccactactcactccaaaa-gaacactcctcaaaataaaactcccagacttcaacatccgagctgagccacattcgaaaagctc 15821310  T
Q  336 ctaaccgaatgaacaag 352  Q
    |||||| ||||||||||    
T  15821311 ctaaccaaatgaacaag 15821327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 20859742 - 20859662
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||||||||| ||  ||| ||| | ||||| || |||||||| |||||||| |||||||||||||||||||    
T  20859742 gagaattgttgttgacacatttggtttggctgagacacacgaggaatttacctaaatgtccctcgacagttaactgccgaa 20859662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 35816079 - 35816189
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagctt 335  Q
    |||||||||||  |||||||| ||||||||||||| ||||||||||    | ||||||||| |||||||||| ||||   |||||||||||||||| ||     
T  35816079 tccacaaccacccatcatcactactcacccccaaa-gaacacccctc---aaaaaactctctgacttcaacatccaaactgagccacattcgaaaaactc 35816174  T
Q  336 ctaaccgaatgaaca 350  Q
     ||||||||||||||    
T  35816175 ttaaccgaatgaaca 35816189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 40745420 - 40745338
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||||||| |   |  |||| ||||||||| | |||||||| ||| ||||||||||||||||    
T  40745420 agagaattgttgttgacacatatgcattggccaagaaacacgagtaatttatccaaatgtccctcggcagttaactgccgaat 40745338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 34798946 - 34798865
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| | ||||||||||||||||| ||| |  |||| ||||||||||| ||||| || ||| ||||||||||||||||    
T  34798946 gagaattgctcttgacacatatgcattggctgagaaacacaagtaatttacccaaatgcccctcggcagttaactgccgaat 34798865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 4528235 - 4528286
Alignment:
Q  104 tgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| | |||||||||||| |||||||||| |||||    
T  4528235 tgtgtcacactagtaatttatcaaaatgtccttcggcagttaactgtcgaat 4528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 6268950 - 6269001
Alignment:
Q  104 tgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  6268950 tgtgtcacacgagtaatttatcgaaatgtccctcgacggttaactgccgaat 6269001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 25994383 - 25994465
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| | |||||||||||||||||||| ||| |  ||||   ||||||||| ||||| || ||||||||||||||||||||    
T  25994383 agagaactattgttgacacatatgcattggctgagaaacacggataatttacccaaatgcccctcgacagttaactgccgaat 25994465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 34503197 - 34503116
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| |||||  |  |||||||||| ||||||||||||||||  || ||| ||||||||||||||||    
T  34503197 gagaattgttgttgacacat-tgcataagggtgtgtcacacgagtaatttaccgaaatacccctcggcagttaactgccgaat 34503116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 38577682 - 38577736
Alignment:
Q  296 cagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    ||||||||||||||||||| | |||| |||||||||||| | |||||||||||||    
T  38577682 cagacttcaacacccaagttgcgccatattcgaaaagctccaaaccgaatgaaca 38577736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 39831090 - 39831171
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||||||||||||| ||  ||| ||| | ||||| ||||||||||| ||||| || |||  ||||||||||||||    
T  39831090 agagaattgttgttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccctcggtagttaactgccgaa 39831171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 40075067 - 40075148
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| ||  | | ||| | ||||| ||||||||||  ||||| |||||||||||||| ||||||||    
T  40075067 gagaattgttgttgacacatttggttaggctgagacacacgagtaatttacttaaatgcccttcgacagttaagtgccgaat 40075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 2416136 - 2416216
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccga 153  Q
    ||||||||||||||  |||||||    || ||||| ||||| |||||  |||| |||||||||||||||||||||||||||    
T  2416136 agagaattgttgttcccacatatagtatggctgtgccacacaagtaaaataccaaaatgtccttcgacagttaactgccga 2416216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 4528285 - 4528241
Alignment:
Q  135 ttcgacagttaactgccgaatgacattttggtaaattaccagtgt 179  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||    
T  4528285 ttcgacagttaactgccgaaggacattttgataaattactagtgt 4528241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 22551003 - 22550923
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||||| |||||| ||    | ||||| ||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  22551003 gagaattgttgtttacacatttgataaggctgtgccacacgagtaatttacctaaatgcccttcggcagttaactgccgaa 22550923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 40740877 - 40740921
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||    
T  40740877 acacgagtaatttacccaaatatccttcgacagttaactgccgaa 40740921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 3696178 - 3696127
Alignment:
Q  104 tgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||| ||||||||| ||||||| || ||| ||||||||||||||||    
T  3696178 tgtgtcacacgagtaatttatcgaaatgcccctcggcagttaactgccgaat 3696127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 41471029 - 41471108
Alignment:
Q  75 agaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||||||||||| ||  ||| | | || |||| ||||| ||||  ||||||||||||||||||||||| ||||    
T  41471029 agaattgttgttgacacatttgatttggccgagtaacacgagtaaattactcaaatgtccttcgacagttaactgtcgaa 41471108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 5532431 - 5532477
Alignment:
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  5532431 cacacgagtaatttacccaaatgcccttcggcagttaactgccgaat 5532477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 25995234 - 25995152
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||| |||||| |||  || |  | || |||||||||   ||||||||||||||||||| |||||||||    
T  25995234 agagaattgttgttgacatatatgcgttggttgagaaatacaagtaatttattcaaatgtccttcgacagttatctgccgaat 25995152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 28618539 - 28618493
Alignment:
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  28618539 cacacaagtaatttacccaaatgcccttcggcagttaactgccgaat 28618493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 914647 - 914732
Alignment:
Q  66 taagatgagagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgcc 151  Q
    ||||||| |||||||||||||  ||||| ||  ||| || || || || ||||||||||| ||||| |||||| ||||||||||||    
T  914647 taagatgggagaattgttgttcccacatttggtttggctatgccagacgagtaatttacccaaatgcccttcggcagttaactgcc 914732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 35645892 - 35645937
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| ||||||| | |||||||||||| ||||||||||||||||    
T  35645892 acactactaatttatccaaatgtccttcggcagttaactgccgaat 35645937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 36344977 - 36345022
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| ||||| || ||| ||||||||||||||||    
T  36344977 acactagtaatttacccaaatgcccctcggcagttaactgccgaat 36345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 44726521 - 44726476
Alignment:
Q  134 cttcgacagttaactgccgaatgacattttggtaaattaccagtgt 179  Q
    ||||||||||||||||||||| |||||||| ||||| ||| |||||    
T  44726521 cttcgacagttaactgccgaaggacattttcgtaaagtactagtgt 44726476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 38577554 - 38577582
Alignment:
Q  42 aacccaccaaaacacatcaccacctaaga 70  Q
    |||||||||||||||||||||||||||||    
T  38577554 aacccaccaaaacacatcaccacctaaga 38577582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 41472116 - 41472072
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||    
T  41472116 acacgagtaatttacccaaatacccttcgacagttaactgccgaa 41472072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 347
Target Start/End: Original strand, 14106355 - 14106465
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagctt 335  Q
    |||||||||||| ||| |||| ||||||||||||| ||||||||||   |||||||||||||||||||||||||||||  |||||||||||| ||||||     
T  14106355 tccacaaccactcatcgtcactactcacccccaaa-gaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacattcgtaaagctc 14106453  T
Q  336 ctaaccgaatga 347  Q
     |||||||||||    
T  14106454 ttaaccgaatga 14106465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 38340985 - 38340906
Alignment:
Q  76 gaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  38340985 gaattgttgttgacacatatgtattggctgtgtcgcactagtaatttatcgaaatgtccctcgacagttaactgccgaat 38340906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 43328880 - 43328958
Alignment:
Q  77 aattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |  |||||||||||||||    
T  43328880 aattgttgttgacacatatgcattggctgtgtcacactagtaatttaccgaaatgccccttggtagttaactgccgaat 43328958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 2270826 - 2270907
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||   | ||| ||||||||||||||||    
T  2270826 gagaattgttgttgacacatatgcattggttgtgtcacactagtaatttaccgaaatactcctcggcagttaactgccgaat 2270907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 349
Target Start/End: Complemental strand, 14405451 - 14405334
Alignment:
Q  232 acagtccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaa 331  Q
    ||||||||||| |||  ||  |||| ||||||||||||| ||||| ||||   |||||||||| ||||||||||||||||||||||||||||| ||| ||    
T  14405451 acagtccacaatcacccattgtcactactcacccccaaaagaacatccctcaaaataaaactcccagacttcaacacccaagtcgagccacatgcgacaa 14405352  T
Q  332 gcttctaaccgaatgaac 349  Q
    ||| |||||| |||||||    
T  14405351 gctcctaaccaaatgaac 14405334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 29600698 - 29600779
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| |||| |||||||||||||| ||||||||||| ||||||||||  ||||| || ||||||||||||||||||||    
T  29600698 gagaattgctgtttacacatatgcattggctgtgtcacaccagtaatttactaaaatgcccctcgacagttaactgccgaat 29600779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 4015242 - 4015192
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaattta 123  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4015242 agagaattgttgttgacacatatgcattggctgtgtcacactagtaattta 4015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 7874538 - 7874424
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagctt 335  Q
    |||||||||||  ||| |||| ||||||||| ||  ||||| ||||   ||||||||||  |||||||||||||||||  |||||||||||||||||||     
T  7874538 tccacaaccacccatcgtcactactcaccccaaa--gaacatccctcaaaataaaactccaagacttcaacacccaagctgagccacattcgaaaagctc 7874441  T
Q  336 ctaaccgaatgaacaag 352  Q
    |||||| ||||||||||    
T  7874440 ctaaccaaatgaacaag 7874424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 35935152 - 35935233
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||| |||||||||||||||||| ||| |  |||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  35935152 gagaattgtggttgacacatatgcattggctgagagacacaagtaatttacccaaatgcccttcggcagttaactgccgaat 35935233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 5254453 - 5254391
Alignment:
Q  288 aaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| | |||||||||||||    
T  5254453 aaaactctcagacttcaacacccaaactgagccacattcgaaaagctccaaaccgaatgaaca 5254391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 33417057 - 33416975
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||  ||||  || ||  ||||||||||||||||    
T  33417057 agagaattgatgttggcacatatgcattggctgtgtcacactagtaatttactaaaatacccctcagcagttaactgccgaat 33416975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 2528636 - 2528688
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  2528636 ctgtgtcacactagtaatttaccgcaatgcccttcggcagttaactgccgaat 2528688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 7460924 - 7460836
Alignment:
Q  236 tccacaaccacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacatt 325  Q
    |||||||||||  ||| |||| ||||| ||||||| ||||||||||   |||||||||| ||||||||||||||||||  ||||||||||    
T  7460924 tccacaaccacacatcgtcactactcaaccccaaa-gaacacccctcaaaataaaactcccagacttcaacacccaagctgagccacatt 7460836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 29948900 - 29948819
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||   | ||| ||| |  |||||||||||||||| ||||| || ||||||||||||||||||||    
T  29948900 gagaattgttgttgacacattatctttggctgagaaacactagtaatttacccaaatgcccctcgacagttaactgccgaat 29948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 4014232 - 4014283
Alignment:
Q  104 tgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| ||||||| |||||  ||||||||||||||||    
T  4014232 tgtgtcacactagtaatttatcgaaatgcccttcaccagttaactgccgaat 4014283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 12252056 - 12252138
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||   ||||| ||| |  |||||||||||||||| |||||  | ||| ||||||||||||||||    
T  12252056 agagaattgttgttgacacattgtcattggctgagaaacactagtaatttacctaaatgctcctcggcagttaactgccgaat 12252138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 15488281 - 15488200
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| |||||  |  ||||||||| |||||||||| |||||||||| ||||||||||| || |||||    
T  15488281 gagaattgttgttgacacat-tgcataaggttgtgtcacattagtaatttatcgaaatgtccctcgacagttaattgtcgaat 15488200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 14405538 - 14405485
Alignment:
Q  17 accacctaacatggcccgtgaagataacccaccaaaacacatcaccacctaaga 70  Q
    |||||||||||  |||| | ||||||||| ||||||||||||||||||||||||    
T  14405538 accacctaacaaagcccctaaagataacctaccaaaacacatcaccacctaaga 14405485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 14106276 - 14106316
Alignment:
Q  30 gcccgtgaagataacccaccaaaacacatcaccacctaaga 70  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  14106276 gcccctgaagataacccaccaaaacacaacaccacctaaga 14106316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 20937832 - 20937912
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||  ||||| ||  ||| ||||| ||||| ||||| ||||| ||||| |||||| |||||||||||||||    
T  20937832 gagaattgttgttcccacatttggtttggctgtgccacacgagtaaattacctaaatgcccttcggcagttaactgccgaa 20937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 40969776 - 40969703
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactg 149  Q
    |||||||||||||||||||||||||||  || |||||||  ||||||||| | |||||| ||||  ||||||||||    
T  40969776 gagaattgttgttgacacatatgcattagctatgtcaca--agtaatttatcaaaatgttcttcagcagttaactg 40969703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 33002410 - 33002363
Alignment:
Q  108 tcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| ||||||||| ||||||||||||||  |||||||||||||||    
T  33002410 tcacacgagtaatttatcgaaatgtccttcggtagttaactgccgaat 33002363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 4286840 - 4286758
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||| | | ||| ||| |  |||||||||| ||||  ||||  || ||||||||||||||||||||    
T  4286840 agagaattgttgttgacacatgttctttggctgagaaacactagtaaattactcaaatacccctcgacagttaactgccgaat 4286758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 6233677 - 6233639
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaact 148  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  6233677 acactagtaatttacccaaatgtccttcggcagttaact 6233639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 16952223 - 16952324
Alignment:
Q  242 accacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaacc 341  Q
    |||||| ||| |||| ||||||||||||| ||||||||||   ||| |||||| ||| | |||||||| |||| || |||||| ||||||||| ||| ||    
T  16952223 accactcatcgtcactactcacccccaaa-gaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatcc 16952321  T
Q  342 gaa 344  Q
    |||    
T  16952322 gaa 16952324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 17022888 - 17022989
Alignment:
Q  242 accacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaacc 341  Q
    |||||| ||| |||| ||||||||||||| ||||||||||   ||| |||||| ||| | |||||||| |||| || |||||| ||||||||| ||| ||    
T  17022888 accactcatcgtcactactcacccccaaa-gaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatcc 17022986  T
Q  342 gaa 344  Q
    |||    
T  17022987 gaa 17022989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 17060194 - 17060295
Alignment:
Q  242 accacttatcatcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaacc 341  Q
    |||||| ||| |||| ||||||||||||| ||||||||||   ||| |||||| ||| | |||||||| |||| || |||||| ||||||||| ||| ||    
T  17060194 accactcatcgtcactactcacccccaaa-gaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatcc 17060292  T
Q  342 gaa 344  Q
    |||    
T  17060293 gaa 17060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 28420353 - 28420271
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||| |||||||||||   | ||| ||| |  |||||||||||||||| ||||| || | ||||||||||||||||||    
T  28420353 agagaattgatgttgacacattacctttggctgagaaacactagtaatttacccaaatgccccttgacagttaactgccgaat 28420271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 3086165 - 3086120
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| ||||| ||||||  |||||||||||||||    
T  3086165 acactagtaatttacccaaatgcccttcggtagttaactgccgaat 3086120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 30802014 - 30802059
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| ||||| || ||| ||||||||||||||||    
T  30802014 acactagtaatttacccaaatgcccctcggcagttaactgccgaat 30802059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 5254566 - 5254538
Alignment:
Q  42 aacccaccaaaacacatcaccacctaaga 70  Q
    |||||||||||||||||||||||||||||    
T  5254566 aacccaccaaaacacatcaccacctaaga 5254538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 10334412 - 10334452
Alignment:
Q  115 agtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||| |||||||| ||| ||||||||||||||||    
T  10334412 agtaatttacctaaatgtccatcggcagttaactgccgaat 10334452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 43258835 - 43258791
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||| |||||  |||||||||||| |||||||||||||||    
T  43258835 acactagtactttacgaaaatgtccttcggcagttaactgccgaa 43258791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 134449 - 134368
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||  | ||| ||||||||||||||||    
T  134449 gagaattgatgttgacacatatgcattggctgtgtcacactagtaatttaccgaaatgctcctcggcagttaactgccgaat 134368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 53535927 - 53536008
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||| ||||||||||||||||    
T  53535927 gagaattgctgttgacacatatgcattggctgtgtcacactagtaatttactaaaatgcccttcggcagttaactgccgaat 53536008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 46169336 - 46169255
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||  | ||| ||||||||||||||||    
T  46169336 gagaatcgttgttgacacatatgcattggctctgtcacactagtaatttaccgaaatgctcctcgtcagttaactgccgaat 46169255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 1736227 - 1736145
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||   | | ||||||||||||||||    
T  1736227 agagaattgttgttgacacatatgcattggttgtgtcacattaataatttaccgaaatgtttcttggcagttaactgccgaat 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 46165680 - 46165761
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| || ||  | |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  46165680 gagaattgttgttgacacat-tgtataaggctgtgtcacactagtaatttaccgaaatgtccttcggcagttaactgtcgaat 46165761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 28322255 - 28322174
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| ||| |  |||| ||||||||||  |||||||| |||  |||||||||||||||    
T  28322255 gagaattgttgttgacacatatgcattggctgagaaacacgagtaatttactcaaatgtccctcggtagttaactgccgaat 28322174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 33812961 - 33812879
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||||  || |  |||  ||||||||||| |||||||  ||| ||||||||||||||||    
T  33812961 agagaattgttgttgacacatatgcattggttgagaaacatgagtaatttacccaaatgtcactcggcagttaactgccgaat 33812879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 40962888 - 40962970
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||||||||| ||| |  |||| ||||||||||| ||||| || | | ||||| ||||||||||    
T  40962888 agagaattgttgttgacacatatgcattggctgagaaacacgagtaatttacccaaatgccccttggcagttgactgccgaat 40962970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 31050511 - 31050607
Alignment:
Q  253 tcacaactcacccccaaacgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    |||| ||||||||||||  ||||||||||   ||||||||   ||||||||||||||||||   ||||||| |||||||||| |||||||||||||||    
T  31050511 tcactactcacccccaag-gaacacccctcaaaataaaacagccagacttcaacacccaagcttagccacaatcgaaaagctcctaaccgaatgaaca 31050607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 36480675 - 36480594
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| |||    |||| ||||||||| | |||||| | ||| ||||||||||||||||    
T  36480675 gagaattgttgttgacacatatgcattggctgataaacacaagtaatttatccaaatgttcctcggcagttaactgccgaat 36480594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 42528806 - 42528887
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||| |||||||||| ||| |  |||| ||||||||| | ||||| || ||| ||||||||||||||||    
T  42528806 gagaattgttgttgacaaatatgcattggctgagaaacacaagtaatttagccaaatgcccatcggcagttaactgccgaat 42528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 44680171 - 44680132
Alignment:
Q  115 agtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  44680171 agtaatttacctaaatgtccttcgacagttaactgccgaa 44680132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 2825996 - 2825918
Alignment:
Q  272 gaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    ||||||||||   |||||||||| || ||||||||||||||   || |||| ||||||||||| |||||||||||||||    
T  2825996 gaacacccctcaaaataaaactcccaaacttcaacacccaaactgaaccaccttcgaaaagctcctaaccgaatgaaca 2825918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 55587292 - 55587374
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||  ||||| ||  ||| || || ||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  55587292 agagaattgttgttcccacatttggtttggctatgccacacgagtaatttacccaaatgcccttcggcagttaactgccgaat 55587374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 11566904 - 11566859
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||||    
T  11566904 acactagtaatttacctaaatgtccatcggcagttaactgccgaat 11566859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 28157516 - 28157597
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||||| |||| ||| |  |||| ||||||||| | ||||| || ||| || |||||||||||||    
T  28157516 gagaattgttgttgacacatatgtattggctgagaaacacgagtaatttatccaaatgcccctcggcaattaactgccgaat 28157597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 9014014 - 9013926
Alignment:
Q  67 aagatgagagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||| |||||||||| ||||||||||| ||  | | ||| | ||||| ||||||||||| ||||  |||||| ||||||||||||||||    
T  9014014 aagaagagagaattgctgttgacacatttggttaggctgagacacacgagtaatttacctaaattcccttcggcagttaactgccgaat 9013926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 40239591 - 40239639
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgcc 151  Q
    ||||||||||||||||||||| ||||||| || |||| |||||||||||    
T  40239591 ctgtgtcacactagtaatttatcgaaatgcccctcgatagttaactgcc 40239639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 46165760 - 46165716
Alignment:
Q  135 ttcgacagttaactgccgaatgacattttggtaaattaccagtgt 179  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||    
T  46165760 ttcgacagttaactgccgaaggacatttcggtaaattactagtgt 46165716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 3183945 - 3183996
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||| ||||| |||| |||| | ||||||||||||||||||||||||||||    
T  3183945 ctgtgccacacgagtattttatctaaatgtccttcgacagttaactgccgaa 3183996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 3186173 - 3186126
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgc 150  Q
    ||||| ||||| |||| |||||| ||||||||||||||||||||||||    
T  3186173 ctgtgccacacgagtattttacctaaatgtccttcgacagttaactgc 3186126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 40240478 - 40240427
Alignment:
Q  104 tgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||||||||||||| |||||| || | | ||||||||||||||||    
T  40240478 tgtgtcacactagtaatttactgaaatgccccttggcagttaactgccgaat 40240427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 34530826 - 34530864
Alignment:
Q  134 cttcgacagttaactgccgaatgacattttggtaaatta 172  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  34530826 cttcgacagttaactgccgaaggacatttaggtaaatta 34530864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 35341207 - 35341284
Alignment:
Q  272 gaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaaca 350  Q
    ||||||||||   |||||||||| || ||||||||||| || | |||||||||||||||||||  |||| |||||||||    
T  35341207 gaacacccctcaaaataaaactcccaaacttcaacaccaaact-gagccacattcgaaaagctcataactgaatgaaca 35341284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 38368201 - 38368247
Alignment:
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||| ||||||||| | |||||||||||| ||||||||||||||||    
T  38368201 cacacgagtaatttatccaaatgtccttcggcagttaactgccgaat 38368247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 55588387 - 55588341
Alignment:
Q  109 cacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  55588387 cacacgagtaatttacccaaatgcccttcggcagttaactgccgaat 55588341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 40061300 - 40061219
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||||||| || ||  ||| ||| | ||||| ||||||||||| ||||| || ||| |||||||| ||||||    
T  40061300 agagaattgttgttgacatatttggtttggctgagacacacgagtaatttacctaaatgcccatcggcagttaaccgccgaa 40061219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 40963825 - 40963797
Alignment:
Q  73 agagaattgttgttgacacatatgcattg 101  Q
    |||||||||||||||||||||||||||||    
T  40963825 agagaattgttgttgacacatatgcattg 40963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 43176730 - 43176686
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||    
T  43176730 acacgagtaatttacctaaatacccttcgacagttaactgccgaa 43176686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 8679498 - 8679579
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| | | |  |||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  8679498 gagaattgttgttgacacatatgcattggccgagaaacacgagtaatttactgaaatgtccctcggcagttaactgccgaat 8679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 8680381 - 8680300
Alignment:
Q  74 gagaattgttgttgacacatatgcatt-gactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||| |||||  | ||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  8680381 gagaattgttgttgacacat-tgcataaggctgtgtcacacgagtaatttacccaaatgcccttcggcagttaactgccgaat 8680300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 18563392 - 18563450
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatg 131  Q
    ||||||||||||| |||||||||||||||  ||||||||| |||||||||| |||||||    
T  18563392 agagaattgttgtagacacatatgcattggttgtgtcacattagtaatttatcgaaatg 18563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 20509289 - 20509370
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||||||||||||||||||||||| ||| |  |||| | ||||||||| ||||| |||||  ||||||| ||||||||    
T  20509289 gagaattgttgttgacacatatgcattggctgagaaacacaaataatttacctaaatgcccttcagcagttaattgccgaat 20509370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 38408605 - 38408525
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||||||||| ||  ||| ||| | ||||| ||||||||||| ||||| |||||| || ||||||||||||    
T  38408605 gagaattgttgttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccttcggcaattaactgccgaa 38408525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 13950567 - 13950518
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaattta 123  Q
    |||||||| | |||||||||||||||||  ||||||||| ||||||||||    
T  13950567 gagaattgctattgacacatatgcattggttgtgtcacattagtaattta 13950518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 36503007 - 36503071
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttc 137  Q
    |||||||||||||||| |||| ||  ||||||  | ||||| ||||||||||| |||||||||||    
T  36503007 agagaattgttgttgatacatttggtttgactaagacacacgagtaatttacctaaatgtccttc 36503071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 456179 - 456098
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||||| ||||||||||||||||||| ||| |  |||| ||||||||||| ||||| || ||| ||||||||||||||||    
T  456179 gagaattgctgttgacacatatgcattggctgagaaacacgagtaatttacccaaatgcccctcggcagttaactgccgaat 456098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 24991336 - 24991264
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaa 146  Q
    |||| |||||||||||| |||||||||| |||||||||| |||||||||||  ||||| |||||| |||||||    
T  24991336 gagagttgttgttgacagatatgcattggctgtgtcacagtagtaatttactaaaatgcccttcggcagttaa 24991264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 455404 - 455478
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaact 148  Q
    |||||||||||||||||||||||||||| ||| |  |||| ||||||||||| ||||| |||||| |||| ||||    
T  455404 gagaattgttgttgacacatatgcattggctgagaaacacgagtaatttacccaaatgcccttcggcagtaaact 455478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 24719880 - 24719956
Alignment:
Q  78 attgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||||| ||  | | ||| | ||||| | ||||||||| |||||||||||| |||||||||||||||    
T  24719880 attgttgttgacacatttgattaggctgagacacacgactaatttacctaaatgtccttcggcagttaactgccgaa 24719956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 15871725 - 15871806
Alignment:
Q  73 agagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    ||||||||||| |||||||||||||||||  || ||| ||||||||||||||  ||||| |  ||| ||||||||||| ||||    
T  15871725 agagaattgttcttgacacatatgcattggttgggtc-cactagtaatttactaaaatgccgctcggcagttaactgctgaat 15871806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 17337622 - 17337667
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaat 155  Q
    |||||| ||||||||| ||||| || ||||||||||||||||||||    
T  17337622 acactattaatttacccaaatgcccctcgacagttaactgccgaat 17337667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 9049186 - 9049142
Alignment:
Q  110 acactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||    
T  9049186 acactagtactttacgaaaatgcccttcgacagttaactgccgaa 9049142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 11592 - 11512
Alignment:
Q  74 gagaattgttgttgacacatatgcattgactgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccgaa 154  Q
    |||||||||||||  ||||| ||  ||| ||||| ||||| ||||| ||||| ||||| |||||| |||||||||||||||    
T  11592 gagaattgttgttcccacatttggtttggctgtgccacacgagtaaattacctaaatgcccttcggcagttaactgccgaa 11512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 235896 - 235946
Alignment:
Q  103 ctgtgtcacactagtaatttaccgaaatgtccttcgacagttaactgccga 153  Q
    ||||||||||| |||| |||||  ||||| |||||||||||||||||||||    
T  235896 ctgtgtcacacgagtattttacgaaaatgcccttcgacagttaactgccga 235946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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