View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_14 (Length: 371)
Name: NF18125_low_14
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 13888283 - 13887928
Alignment:
| Q |
7 |
tcgaagaatattaatcgagtaaacaatcattttggtccataaatataggaggtgttgttactacaatctttaaatgtattgacatgacaaaaacaccttc |
106 |
Q |
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| T |
13888283 |
tcgaagcacattaatcgagtaaacaatcattttggtccataaatataggaggtgttattactacaatctttaaatgtattgacatgacaaaaacaccttc |
13888184 |
T |
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| Q |
107 |
aagtgtatcaataaaaatgactaaaagaagatattcgtgaac----caaactaacaaaacacattcaacaatcaaattgattaacaatagttgcatttag |
202 |
Q |
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| T |
13888183 |
aagtgtatcaataaaaatgactaaaagaagacattcgtgaaccgaactaactaacaaaacacattcaacaatcaaattgattaacaatagttgcatttag |
13888084 |
T |
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| Q |
203 |
acacgttttgtgattttgatactattgtaacaacacctcacacgtttaagaaccaaaataaatgtttactttgcattaata-nnnnnnnnngctgcacct |
301 |
Q |
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| T |
13888083 |
acacgttttgtgattttgatactattgtaatgacacctcacacgtttaagaaccaaaataactgtttactttgcattaatatttttttttggctgcacct |
13887984 |
T |
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| Q |
302 |
aatcacttattaaatgaagacaaatatgaaagatatatcaatatcaatgaataaaa |
357 |
Q |
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| T |
13887983 |
aatcacttattaaatgaagacaaatatgaaagatatatcaatatcaatgaataaaa |
13887928 |
T |
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