View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18125_low_15 (Length: 359)

Name: NF18125_low_15
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18125_low_15
NF18125_low_15
[»] chr2 (10 HSPs)
chr2 (1-345)||(8368248-8368592)
chr2 (1-345)||(8400818-8401162)
chr2 (1-345)||(8422395-8422739)
chr2 (1-110)||(8411997-8412106)
chr2 (1-110)||(8417215-8417324)
chr2 (1-110)||(8431136-8431245)
chr2 (1-110)||(8434095-8434204)
chr2 (1-86)||(8375924-8376009)
chr2 (1-86)||(8439094-8439179)
chr2 (67-103)||(8403987-8404023)
[»] chr4 (3 HSPs)
chr4 (232-294)||(55331029-55331091)
chr4 (234-294)||(55336466-55336526)
chr4 (1-110)||(55336242-55336351)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 8368248 - 8368592
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8368248 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctct 8368347  T
Q  101 tcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368348 tcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttct 8368447  T
Q  201 tctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagctctatca 300  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8368448 tctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagctctatca 8368547  T
Q  301 agagctagaacttcttgaatagtatcctttatatattcctctgtg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8368548 agagctagaacttcttgaatagtatcctttatatattcctctgtg 8368592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 8401162 - 8400818
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8401162 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctct 8401063  T
Q  101 tcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401062 tcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttct 8400963  T
Q  201 tctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagctctatca 300  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8400962 tctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagctctatca 8400863  T
Q  301 agagctagaacttcttgaatagtatcctttatatattcctctgtg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8400862 agagctagaacttcttgaatagtatcctttatatattcctctgtg 8400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 8422739 - 8422395
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8422739 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctct 8422640  T
Q  101 tcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422639 tcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttct 8422540  T
Q  201 tctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagctctatca 300  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8422539 tctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagctctatca 8422440  T
Q  301 agagctagaacttcttgaatagtatcctttatatattcctctgtg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8422439 agagctagaacttcttgaatagtatcctttatatattcctctgtg 8422395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8411997 - 8412106
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8411997 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8412096  T
Q  101 tcataacttc 110  Q
    | || |||||    
T  8412097 tgatcacttc 8412106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8417215 - 8417324
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8417215 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8417314  T
Q  101 tcataacttc 110  Q
    | || |||||    
T  8417315 tgatcacttc 8417324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8431136 - 8431245
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    ||||||||||| | ||||||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| ||||||||||| |  ||||||||||    
T  8431136 gctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatcttcaacgtcttttctct 8431235  T
Q  101 tcataacttc 110  Q
    | || |||||    
T  8431236 ttatcacttc 8431245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8434095 - 8434204
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8434095 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8434194  T
Q  101 tcataacttc 110  Q
    | || |||||    
T  8434195 tgatcacttc 8434204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8376009 - 8375924
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttc 86  Q
    ||||||||||| ||||| ||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| |||||||||||    
T  8376009 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttc 8375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8439094 - 8439179
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttc 86  Q
    ||||||||||| ||||| ||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| |||||||||||    
T  8439094 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttc 8439179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 8403987 - 8404023
Alignment:
Q  67 cctaatctctcataatcttccatatcttttctcttca 103  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8403987 cctaatctctcataatcctcaatatcttttctcttca 8404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 55331029 - 55331091
Alignment:
Q  232 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagct 294  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||||||||||||||||    
T  55331029 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 55331091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 55336466 - 55336526
Alignment:
Q  234 aggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagct 294  Q
    |||||||||||||  ||| || ||||||| |||| ||||||||| ||||||||||||||||    
T  55336466 aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct 55336526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 55336242 - 55336351
Alignment:
Q  1 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 100  Q
    ||||||||||||||||||||||| ||||| || ||||   |||| || ||||||||| | |  ||||| | ||||||||| ||||| || ||||| ||||    
T  55336242 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 55336341  T
Q  101 tcataacttc 110  Q
    | | ||||||    
T  55336342 ttacaacttc 55336351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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