View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_18 (Length: 319)
Name: NF18125_low_18
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 32712378 - 32712467
Alignment:
| Q |
109 |
tacttggacaatgaaaacattgatcaatactatcttccaaacctttatcacacagcgcgcaattagtagaacaattaactccacgatctt |
198 |
Q |
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| T |
32712378 |
tacttagacaatgaaaacatagatcaattctatcttccaaatctttatcacacaatgcgcaattagtagaacaagcaactccacgatctt |
32712467 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 32712217 - 32712268
Alignment:
| Q |
31 |
tttccagcaacaggatacatattctatcatataatttatgaagccatgaaat |
82 |
Q |
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| T |
32712217 |
tttccagcaacaggatacatattctatccgataatttatgaagccatgaaat |
32712268 |
T |
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