View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_19 (Length: 315)
Name: NF18125_low_19
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_19 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 33992334 - 33992044
Alignment:
| Q |
19 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
33992334 |
cttggtgctttggtaaattccaagatctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtctgtgtcacttgcatttttcctg |
33992235 |
T |
|
| Q |
119 |
gtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtag |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992234 |
gtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtag |
33992135 |
T |
|
| Q |
219 |
cctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33992134 |
cctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33992044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 33952815 - 33952524
Alignment:
| Q |
19 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33952815 |
cttggcgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtccgtgtcacttgcatttttcctg |
33952716 |
T |
|
| Q |
119 |
gtaaatgagaagaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagta |
217 |
Q |
| |
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||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952715 |
gtaaatgagcagaggttaattagttacttaaaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagta |
33952616 |
T |
|
| Q |
218 |
gcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33952615 |
gcctagaagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33952524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 33960121 - 33959824
Alignment:
| Q |
19 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33960121 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
33960022 |
T |
|
| Q |
119 |
gtaaatgagaagaggttaattaattactt-aaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagta |
217 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33960021 |
gtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagta |
33959922 |
T |
|
| Q |
218 |
gcctagaagaaaat------ataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33959921 |
gcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33959824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 33975421 - 33975124
Alignment:
| Q |
19 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33975421 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtccgtgtcacttgcatttttcctg |
33975322 |
T |
|
| Q |
119 |
gtaaatgagaagaggttaattaattactt-aaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagta |
217 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33975321 |
gtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagta |
33975222 |
T |
|
| Q |
218 |
gcctagaagaaaat------ataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33975221 |
gcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33975124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 33942353 - 33942273
Alignment:
| Q |
38 |
ccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctgg |
119 |
Q |
| |
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||||| ||||| || | ||||||||||| ||||||||||||| |||||| || || || |||||||||||||||||||||| |
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| T |
33942353 |
ccaagctctctcagcagatcatgaaggacgatgaagtgatta-tgtagtagtaattttctgtgtcacttgcatttttcctgg |
33942273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 33913635 - 33913544
Alignment:
| Q |
27 |
tttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
118 |
Q |
| |
|
|||| ||| |||| || |||||||||| ||||||||||| |||||||| ||||||||| || | || ||||||||||||||||||||| |
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|
| T |
33913635 |
tttgataatttcctagctctcttagaagatcatgaaggaatatgaagtggctattgtagtagtaactttctgtgtcacttgcatttttcctg |
33913544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 8277941 - 8278231
Alignment:
| Q |
19 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| | | |
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|
| T |
8277941 |
cttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtccgtgtcactttcactttttcag |
8278040 |
T |
|
| Q |
119 |
gtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtag |
218 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
8278041 |
gtaaatgagcagaggttaattagttacttaaagataagaaattatttcacaggatttatgtagagtatcattcatgtgagatatttaacaattttattag |
8278140 |
T |
|
| Q |
219 |
cctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
309 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
8278141 |
ccaagaagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgaggcctaatttattgatgatttccat |
8278231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 2891495 - 2891616
Alignment:
| Q |
20 |
ttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctgg |
119 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||| || ||||| |||||||||||| |||| ||||||| || || ||||||||||||||||| |||| |
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|
| T |
2891495 |
ttggtgctttgagaaattccaagctctagtagaagattatgaaagatgatgaagtggctattatagttgtaattgtatgtgtcacttgcattttttctgg |
2891594 |
T |
|
| Q |
120 |
taaatgagaagaggttaattaa |
141 |
Q |
| |
|
|||||||| | ||| ||||||| |
|
|
| T |
2891595 |
taaatgagcaaagggtaattaa |
2891616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 12362 - 12246
Alignment:
| Q |
23 |
gtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctggtaa |
122 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| || ||| | ||||||||||||||||| ||| |
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|
| T |
12362 |
gtgcattggtaaattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtat |
12263 |
T |
|
| Q |
123 |
atgagaagaggttaatt |
139 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
12262 |
atgagcagaggttaatt |
12246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 12174 - 12115
Alignment:
| Q |
250 |
gtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
309 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttccat |
12115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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