View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_21 (Length: 305)
Name: NF18125_low_21
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 38313971 - 38314165
Alignment:
| Q |
12 |
caaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtgg |
111 |
Q |
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| T |
38313971 |
caaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtgg |
38314070 |
T |
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| Q |
112 |
acataatgctgcaaaattaaacaaataagagtgttacaaaatacaatcacataaacaatagaccaaatacctattgtggtcctttaaattagata |
206 |
Q |
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| T |
38314071 |
acataatgctgcaaaattaaacaaataagagtgttacaaaatacaatcacataaacaatagaccaaatacctattgtggtcctttaaattagata |
38314165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 38276119 - 38276204
Alignment:
| Q |
53 |
gtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtggacataatgctgcaaaattaaacaaata |
138 |
Q |
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| T |
38276119 |
gtgaaaattaggaggaggaagtgattaagagggtgcttgttatgataccagtatagtggacataaaactgcaaaatgaaacaaata |
38276204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 38272406 - 38272491
Alignment:
| Q |
53 |
gtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtggacataatgctgcaaaattaaacaaata |
138 |
Q |
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| T |
38272406 |
gtgaaaattaggaggaggaaataattgagagggtgcttgtgatgataagcatatagtggacatgatgctgcaaaatagaacaaata |
38272491 |
T |
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