View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_22 (Length: 303)
Name: NF18125_low_22
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 27558538 - 27558811
Alignment:
| Q |
18 |
gtaataaatatatacaatataaaaccgtttatttgtttttagttaacaatttataaggttttgaaagagttgatttatgatgtggtattataacttttat |
117 |
Q |
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| T |
27558538 |
gtaataaatatatacaatataaaaccgtttatttgtttttagttaacaatttataaggttttgaaagagttgatttatgatgtggtattataacttttat |
27558637 |
T |
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| Q |
118 |
gacaaagtctagagttttaaccattgaaatcctttttcttataagaaaataagttgatttaagagcacaggaatgtatattttaaaatcttgtgaaaacc |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27558638 |
gacgaagtctagagttttaaccattgaaatcctttttcttataagaaaataagttgatttaagagcacaggaatgtgtattttataatcttgtgaaaacc |
27558737 |
T |
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| Q |
218 |
ttaattggctaactcatagtaaaagttgtcattgaaattagtttgtaataaaacaatcagctctacctatgctac |
292 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
27558738 |
ttaattggctaac-catagtaaaagttgtcattgaaattagtttgtaatcaaacaatcagctctacctgtgctac |
27558811 |
T |
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