View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_23 (Length: 296)
Name: NF18125_low_23
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 24479349 - 24479081
Alignment:
| Q |
11 |
cacagaggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctca |
110 |
Q |
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| T |
24479349 |
cacagaggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctca |
24479250 |
T |
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| Q |
111 |
cctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaaatccaacatagagataaaatagttagtgatagtttc |
210 |
Q |
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| T |
24479249 |
cctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaaatccaacatagagataaaatagttagtgatagtttc |
24479150 |
T |
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| Q |
211 |
tccttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattgcagtcagtg |
279 |
Q |
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| T |
24479149 |
tccttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattgaagtcagtg |
24479081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 24693804 - 24694009
Alignment:
| Q |
71 |
aaggagaatattgtgctacttgtacagaagactattctcacctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagctt |
170 |
Q |
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| T |
24693804 |
aaggagaatattgtgaaacctgtacagaagactattctcacctgagtgaatctgaagattctattaaggttttgagttaccctatgcatcaagggagctt |
24693903 |
T |
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| Q |
171 |
gaaaatccaacatagagataaaatagttagtgatagtttctccttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattg |
270 |
Q |
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| T |
24693904 |
ggaaaaccaacctagagatttaatggttggtaatagtttctccttcagtaccaaaccatcattaaatgataaaccaaatatatactttgtgaaagcattg |
24694003 |
T |
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| Q |
271 |
cagtca |
276 |
Q |
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||||| |
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| T |
24694004 |
aagtca |
24694009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 24693579 - 24693698
Alignment:
| Q |
20 |
gtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacctgagtga |
119 |
Q |
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|||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||| || ||||| ||||| | |||| || | |||| |
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| T |
24693579 |
gtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgtatggaagattgttcttacttatgtga |
24693678 |
T |
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| Q |
120 |
atccaaagattctattaagg |
139 |
Q |
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| T |
24693679 |
ccccaatgattctattaagg |
24693698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 41369821 - 41369601
Alignment:
| Q |
49 |
atttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctcacctgagtgaatccaaagattctattaaggtgttgaata |
148 |
Q |
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| T |
41369821 |
atttttcctgctctaaataacaaagaagaatattgcgctacctgtatggaagactattctcacctgagcgaatcggaagattctattaaggtgccaagtt |
41369722 |
T |
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| Q |
149 |
accccaagtatcaagggagcttgaaaatccaacatagagataaaatagttagtgatagtttctccttaccaaccaaatcatcattaaaagataaaccaaa |
248 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| | |||| | |||||||||| ||||||| ||| |
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| T |
41369721 |
accctttgtatcaagggagcttgaaaattcaacatagagatttaatggttagtgatagtttctcctcaggcaccataccatcattaaatgataaacaaaa |
41369622 |
T |
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| Q |
249 |
aatagactttgtaaaagcatt |
269 |
Q |
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||| |||||||| ||||||| |
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| T |
41369621 |
aattgactttgtggaagcatt |
41369601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 41370034 - 41369851
Alignment:
| Q |
10 |
gcacagaggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagactattctc |
109 |
Q |
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||||| ||||||||||||| ||||| | |||| ||| ||||| |||||||||||||| | |||| |||||| |||| || ||||| ||||||| |||| |
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| T |
41370034 |
gcacaaaggagtttatttttacaaggaacaaaggagtttattcttcctactctagataacgaagtagaatactgtggtatttgtatggaagactgttctt |
41369935 |
T |
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| Q |
110 |
acctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaaatccaacatagagataaaa |
193 |
Q |
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| T |
41369934 |
acctcagttaccccaatgattctgttaaggggtcaagttaccccatgaatcaaaggagcatgaaaatccaagctagagataaaa |
41369851 |
T |
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