View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_24 (Length: 285)
Name: NF18125_low_24
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 31497748 - 31498022
Alignment:
| Q |
1 |
atcaatacacacttttaaaatagatctcacataaaatggtgatatccatataggtttcatccgagaagagagagagtgttagaaagaaaatgtttttaac |
100 |
Q |
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| T |
31497748 |
atcaatacacactttttaaatagatctcacataaagtggtgagatccacataggtttcatcggagaagagagagagtgttagaaagaaaatgtttttaac |
31497847 |
T |
|
| Q |
101 |
atttctcgttttagaattgttaccatataagaagacatttgaaatgattgtatttgatagcaaatttttagagaatcaatttgttctgaaatcttgcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31497848 |
atttctcgttttagaattgttaccatataagaagacatttgaaatgattgta-ttgatagcaaatttttagagaatcaatttgttctgaaatcttgcttg |
31497946 |
T |
|
| Q |
201 |
at---ttctttaccaaattacattcaaaaggttaataatgcaaactttaataaccaccttacattgattacattga |
273 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31497947 |
atttcttctttaccaaattacattaaaaaggttaataatgcaaactttaataaccaccttacattgattacattga |
31498022 |
T |
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