View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_26 (Length: 273)
Name: NF18125_low_26
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_26 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 37317500 - 37317772
Alignment:
| Q |
1 |
tctataaggcattaggaaaatacatggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagat |
100 |
Q |
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| T |
37317500 |
tctataaggcattaggaaaatacatggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagat |
37317599 |
T |
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| Q |
101 |
ggaactatggaagaaacattcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttat |
200 |
Q |
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| T |
37317600 |
ggaactatggaagaaacattcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttat |
37317699 |
T |
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| Q |
201 |
cattatggggaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggt |
273 |
Q |
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| T |
37317700 |
cattatggggaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggt |
37317772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 273
Target Start/End: Original strand, 37964622 - 37964869
Alignment:
| Q |
23 |
catggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacattca |
122 |
Q |
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| T |
37964622 |
catggaattagaaatgaattggatggataaaatcaat---gagatcaagaacaatggtccttcaatagctgatgagaaggaacaatgggagaagccttca |
37964718 |
T |
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| Q |
123 |
atttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttga |
222 |
Q |
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| T |
37964719 |
atttacaaagtaccatcacaagtcacggatttgaacaaaaaggcctacaaaccacaagtaatttcctttggtccttaccataatggggaggagaatttaa |
37964818 |
T |
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| Q |
223 |
tggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggt |
273 |
Q |
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| T |
37964819 |
agcttatggaagagcacaaatatcgagcgcttgttcgtttcttaaagaggt |
37964869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 37242369 - 37242622
Alignment:
| Q |
20 |
atacatggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacat |
119 |
Q |
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||||||||| || |||||||| ||| | |||||||||||| | || || |||| |||||||||| ||| | || |||||| ||||| |||| |||| | | |
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| T |
37242369 |
atacatggagttagaaatgaagtggcttgatcaaatcaatgaggagatcaagaacaatggtcctacaatagcttatgagaaggaacaatgggagaagcct |
37242468 |
T |
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| Q |
120 |
tcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatt |
219 |
Q |
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| T |
37242469 |
tcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggaaaatt |
37242568 |
T |
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| Q |
220 |
tgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggt |
273 |
Q |
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| T |
37242569 |
taaagcttatggaaaagcacaagcatcgagccctccttcattttttaaagaggt |
37242622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 37304449 - 37304643
Alignment:
| Q |
20 |
atacatggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacat |
119 |
Q |
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||||||||| || |||||||| || | |||||||||||| | || || |||| |||||||||| ||| | ||||||||| ||||| |||| |||| | | |
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| T |
37304449 |
atacatggagttagaaatgaagcggcttgatcaaatcaatgaagagatcaagaacaatggtcctacaatagctgatgagaaggaacaatgggagaagcct |
37304548 |
T |
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| Q |
120 |
tcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggagga |
214 |
Q |
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| T |
37304549 |
tcaatttacaaagtaccctcacaactcacggagctgaaaaagaaggcctacaaaccacaagcaatttcatttggtccttaacattatggagagga |
37304643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 37273154 - 37273325
Alignment:
| Q |
102 |
gaactatggaagaaacattcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatc |
201 |
Q |
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|||| ||||||||||||||||||||||||| |||| ||| | | || | | ||| ||||||||||| || | ||||||||||||||| ||||| | |
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| T |
37273154 |
gaacaatggaagaaacattcaatttacaaagtaccctcacaactcacggagttgaacgaaaaagcctacgtgccccgagcaatttcatttggaccttacc |
37273253 |
T |
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| Q |
202 |
attatggggaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggt |
273 |
Q |
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|||||||| |||| ||||| | | |||||||||| ||||||||| ||||||||||||||||| ||| ||||| |
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| T |
37273254 |
attatgggaaggagcatttaaagcctatggaagagcacaagcatcgagctcttcttcatttcctaaagaggt |
37273325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 16573425 - 16573315
Alignment:
| Q |
153 |
ctaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctc |
252 |
Q |
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||||||||||| | ||||||||||||| |||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| ||||||||||||| | |
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| T |
16573425 |
ctaaacaaaaatgtctacaaaccacaaaaaatttcgtttggtccttatcatcatggtgaggagcatttgatggcaatggaagagtacaagcatagagccc |
16573326 |
T |
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| Q |
253 |
ttcttcatttc |
263 |
Q |
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|| |||||||| |
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| T |
16573325 |
ttattcatttc |
16573315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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