View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_29 (Length: 249)
Name: NF18125_low_29
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37317815 - 37318053
Alignment:
| Q |
1 |
tggttctagagttgagagattcgtacaagccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttat |
100 |
Q |
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| T |
37317815 |
tggttctagagttgagagattcgtacaagccacttgatccaatttggatattggacaaaccaaagtttgttcaaatgatgattcttgatggttgttttat |
37317914 |
T |
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| Q |
101 |
tttggagattttgagagctaatgattgtgttttggatgattatgctgagaatgatcctgtctttggcgaacatgggaaattttatgttttgccttatatt |
200 |
Q |
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| T |
37317915 |
tttggagattttgagagctaatgattgtgttttggatgattatgctgagaatgatcctgtctttggcgaacatgggaaattttatgttttgccttatatt |
37318014 |
T |
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| Q |
201 |
aagcgcgatatgcttatgctcgaaaatcaaatacctatg |
239 |
Q |
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| T |
37318015 |
aagcgtgatatgcttatgctcgaaaatcaaatacctatg |
37318053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 37304754 - 37304858
Alignment:
| Q |
8 |
agagttgagagattcgtacaagccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggag |
107 |
Q |
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| T |
37304754 |
agagttaagagactcgtataaaccacttgatccaatttggataaatgatacaccaaagttccttcaaatgatgattcttgatggttgttttattttggag |
37304853 |
T |
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| Q |
108 |
atttt |
112 |
Q |
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||||| |
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| T |
37304854 |
atttt |
37304858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 37242672 - 37242778
Alignment:
| Q |
8 |
agagttgagagattcgtacaagccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggag |
107 |
Q |
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| T |
37242672 |
agagttgaaagactcatataagtcacttgatccaatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatggttgttttattttggag |
37242771 |
T |
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| Q |
108 |
attttga |
114 |
Q |
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||||||| |
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| T |
37242772 |
attttga |
37242778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 37273375 - 37273612
Alignment:
| Q |
8 |
agagttgagagattcgtacaagccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggag |
107 |
Q |
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| T |
37273375 |
agagttgagagactcgtataagtcgcatgattcaatttggataaatgacacatcaaaattcattcaaatgatgattctcgatggttgtttcattttggaa |
37273474 |
T |
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| Q |
108 |
attttgagagctaa---tgattgtgtt--ttgga-tgattatgctgagaatgatcctgtctttggcgaacatgggaaattttatgttttgccttatatta |
201 |
Q |
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||||||||| ||| ||||| | | | | ||| |||| |||||||||||| |||||||| ||| | |||||||||||| | | | ||||||| |
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| T |
37273475 |
tttttgagagttaacgttgattctaatactcctactgactatgatgagaatgatcccgtctttggtgaaaaagggaaattttatttggcgtcatatatta |
37273574 |
T |
|
| Q |
202 |
agcgcgatatgcttatgctcgaaaatcaaatacctatg |
239 |
Q |
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|||| || ||||||||||| || ||||||||||||||| |
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| T |
37273575 |
agcgtgacatgcttatgcttgagaatcaaatacctatg |
37273612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 37304890 - 37304988
Alignment:
| Q |
137 |
tgattatgctgagaatgatcctgtctttggcgaacatgggaaattttatgttttgccttatattaagcgcgatatgcttatgctcgaaaatcaaatacc |
235 |
Q |
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| T |
37304890 |
tgattatgatgagaatgattttgtgtttggcaaacatgggaaactacatttaatgccatatattaagcgtgacatgcttatgcttgagaatcaaatacc |
37304988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 16573248 - 16573161
Alignment:
| Q |
29 |
gccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagattttgaga |
116 |
Q |
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| T |
16573248 |
gccacttgatccaatttggatacttgacaagtcaaagttccttcaaatgatgattcttgatggttgtttcatcttggagattgtgaga |
16573161 |
T |
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