View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_30 (Length: 231)
Name: NF18125_low_30
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 50580345 - 50580556
Alignment:
| Q |
1 |
cttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaat |
100 |
Q |
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| T |
50580345 |
cttgtttgttctaaaggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaat |
50580444 |
T |
|
| Q |
101 |
gtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50580445 |
gtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttc |
50580544 |
T |
|
| Q |
201 |
tcacaccggttg |
212 |
Q |
| |
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|||||||||||| |
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| T |
50580545 |
tcacaccggttg |
50580556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 11462908 - 11462987
Alignment:
| Q |
38 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac |
117 |
Q |
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| T |
11462908 |
tattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaac |
11462987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1059449 - 1059238
Alignment:
| Q |
1 |
cttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaat |
100 |
Q |
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| T |
1059449 |
cttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaa |
1059350 |
T |
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| Q |
101 |
gtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttc |
200 |
Q |
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||||||||||| ||||| || || ||||||||||||| ||| || || |||||||||||||||| ||||| ||||| ||||||||||||| ||| |||| |
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| T |
1059349 |
gtcttcttcataccaactaattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttc |
1059250 |
T |
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| Q |
201 |
tcacaccggttg |
212 |
Q |
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||||||| |||| |
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| T |
1059249 |
tcacacctgttg |
1059238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 45059076 - 45058993
Alignment:
| Q |
38 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaaccaac |
121 |
Q |
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| T |
45059076 |
tattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaaccaac |
45058993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
| Q |
39 |
attcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaa |
116 |
Q |
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| T |
3893451 |
attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa |
3893374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 10317623 - 10317671
Alignment:
| Q |
39 |
attcatgcatgacccaattacttttctctcctcgaggagctctgccttt |
87 |
Q |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctaccttt |
10317671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 31606022 - 31606050
Alignment:
| Q |
38 |
tattcatgcatgacccaattacttttctc |
66 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31606022 |
tattcatgcatgacccaattacttttctc |
31606050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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