View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18125_low_31 (Length: 227)

Name: NF18125_low_31
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18125_low_31
NF18125_low_31
[»] chr4 (8 HSPs)
chr4 (6-227)||(31245457-31245678)
chr4 (120-211)||(31019291-31019382)
chr4 (120-217)||(31029166-31029263)
chr4 (120-205)||(31477463-31477548)
chr4 (120-225)||(31527886-31527991)
chr4 (141-225)||(31033494-31033577)
chr4 (139-211)||(31158740-31158812)
chr4 (120-217)||(31149833-31149930)
[»] chr6 (4 HSPs)
chr6 (24-223)||(13609526-13609725)
chr6 (120-217)||(33389563-33389660)
chr6 (120-217)||(33287033-33287130)
chr6 (135-211)||(9168268-9168344)
[»] chr7 (2 HSPs)
chr7 (6-169)||(14724733-14724898)
chr7 (190-227)||(14724899-14724936)
[»] chr5 (2 HSPs)
chr5 (6-169)||(17598864-17599029)
chr5 (190-227)||(17598826-17598863)
[»] chr2 (1 HSPs)
chr2 (119-224)||(17439319-17439424)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 31245457 - 31245678
Alignment:
Q  6 tacaaagttcaactcctggatcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacag 105  Q
    |||||||||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||| || ||||||| | |||||||    
T  31245457 tacaaagttcgactcttggatcataataatgcccttcaattgttttgtaggaaggctttcaagagtgatgatatcatgagcggttacatatacttgacag 31245556  T
Q  106 ctgatgtactaacatatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggc 205  Q
     ||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31245557 atgatgcactaacatatgccaatggccttccattagcaattaaagttttgggctcatttttgtatggccgagatgtctctgaatggagaagtgcattggc 31245656  T
Q  206 aagattaagagagaatccaagg 227  Q
    ||| |||||||| || ||||||    
T  31245657 aaggttaagagaaaacccaagg 31245678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 31019382 - 31019291
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagatt 211  Q
    |||||||||||||| ||| |||||||||||||||||||  ||||||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  31019382 tatgccaatggcctaccactagcaattaaagtattgggctcatttttgtttggtcgagatatctccgaatggagaagtgcattggctagatt 31019291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 31029263 - 31029166
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagaga 217  Q
    |||||||||||||| ||| |||| ||||||||||||||  ||||||||| |||||||||| |||||||||||||||||  |||||| ||||| |||||    
T  31029263 tatgccaatggcctaccactagctattaaagtattgggctcatttttgtttggtcgagatatctctgaatggagaagtaaattggctagattgagaga 31029166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 31477463 - 31477548
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggc 205  Q
    |||||||||||||| ||| | |||||||||||||||||  ||||||||| |||||| ||| | |||||||||||||||||||||||    
T  31477463 tatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggc 31477548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 31527991 - 31527886
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagagaga 219  Q
    ||||| |||||| | ||| |||| ||||||| ||||||  ||||||||| |||||||||| | | ||||||||||||||||||| | ||||| ||||| |    
T  31527991 tatgctaatggcttaccactagcgattaaagcattgggctcatttttgtttggtcgagatatttatgaatggagaagtgcattgactagattgagagaca 31527892  T
Q  220 atccaa 225  Q
    ||||||    
T  31527891 atccaa 31527886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 31033577 - 31033494
Alignment:
Q  141 gcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagagagaatccaa 225  Q
    |||||||||||||||||  |||||| || ||||||| || |||||||||||| |||||||||||| ||||| ||||| |||||||    
T  31033577 gcaattaaagtattgggctcatttt-gtgtggtcgaaatatctctgaatggacaagtgcattggctagattgagagaaaatccaa 31033494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 31158812 - 31158740
Alignment:
Q  139 tagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagatt 211  Q
    |||||||||||||||||||  ||||||||| |||||||||  ||| |||||||| |||||||||||| |||||    
T  31158812 tagcaattaaagtattgggatcatttttgtttggtcgagacatctatgaatggaaaagtgcattggctagatt 31158740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 31149930 - 31149833
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagaga 217  Q
    ||||| |||||||| ||  |||||||||||||||| ||  | |||||||||| |||| || | | |||||||| |||||||||||||||||| |||||    
T  31149930 tatgctaatggcctacctctagcaattaaagtattaggctcgtttttgtatgatcgaaatatttttgaatggaaaagtgcattggcaagattgagaga 31149833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 13609526 - 13609725
Alignment:
Q  24 gatcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacagctgatgtactaacatatg 123  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||  | |||   | | ||||||  ||||||||||| |||||    
T  13609526 gatcttaatgatgcccttcgattgttttgtaggaaagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatg 13609625  T
Q  124 ccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagagagaatcc 223  Q
    |  ||||| ||||| |||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13609626 ctgatggcattccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcc 13609725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 33389660 - 33389563
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagaga 217  Q
    ||||| ||||| |||||| |||||||||||||||||||  ||||||||| ||||||  ||||  |||||||||  ||||||||||| ||||| |||||    
T  33389660 tatgctaatggtcttccactagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagaga 33389563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 33287130 - 33287033
Alignment:
Q  120 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagaga 217  Q
    ||||| ||||| || || ||||||||||||||||||||  ||||||||| ||||||  ||||  | |||||||  ||||||||| | |||||||||||    
T  33287130 tatgctaatggtctaccgttagcaattaaagtattgggctcatttttgtttggtcgtaatgtgacggaatggaagagtgcattgactagattaagaga 33287033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 9168344 - 9168268
Alignment:
Q  135 ccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagatt 211  Q
    |||||||||||||||||||||||  ||||||||| ||||||  ||||  ||||||| |  ||||||||||| |||||    
T  9168344 ccattagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatgcaagagtgcattggctagatt 9168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 14724733 - 14724898
Alignment:
Q  6 tacaaagttcaactcctggatcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacag 105  Q
    |||||||||| |||| |  ||| |||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| | |||||    
T  14724733 tacaaagttcgactcataaatcataatgatgcccttcaattgttttgtaggaaagctttaaaaattgacgatgtcatgagcggttacataaactcgacag 14724832  T
Q  106 ctgatgtactaacatatgccaatggccttcc--attagcaattaaagtattggggacatttttgta 169  Q
     |||||||||   ||||||||| || ||| |  ||||||||||||||| |||||  ||||||||||    
T  14724833 atgatgtactcgaatatgccaaaggtcttgcatattagcaattaaagtgttgggatcatttttgta 14724898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 14724899 - 14724936
Alignment:
Q  190 ggagaagtgcattggcaagattaagagagaatccaagg 227  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  14724899 ggagaagtgtattggcaagattaagagagaatccaagg 14724936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 17599029 - 17598864
Alignment:
Q  6 tacaaagttcaactcctggatcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacag 105  Q
    |||||||||| |||| |  ||| |||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| | |||||    
T  17599029 tacaaagttcgactcataaatcataatgatgcccttcaattgttttgtaggaaagctttaaaaattgacgatgtcatgagcggttacataaactcgacag 17598930  T
Q  106 ctgatgtactaacatatgccaatggccttcc--attagcaattaaagtattggggacatttttgta 169  Q
     |||||||||   ||||||||| || ||| |  ||||||||||||||| |||||  ||||||||||    
T  17598929 atgatgtactcgaatatgccaaaggtcttgcatattagcaattaaagtgttgggatcatttttgta 17598864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 17598863 - 17598826
Alignment:
Q  190 ggagaagtgcattggcaagattaagagagaatccaagg 227  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  17598863 ggagaagtgtattggcaagattaagagagaatccaagg 17598826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 17439319 - 17439424
Alignment:
Q  119 atatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggagaagtgcattggcaagattaagagag 218  Q
    |||||| ||||| || ||| |||||||||||||| ||||  ||||||||| |||| |  ||||  |||||||||  ||||||||||| ||||| ||||||    
T  17439319 atatgctaatggtctaccactagcaattaaagtaatgggctcatttttgtttggttgtaatgtgactgaatggaagagtgcattggctagattgagagag 17439418  T
Q  219 aatcca 224  Q
    | ||||    
T  17439419 agtcca 17439424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University